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Thulani Hewavithana (qnm481)
SyntenyLink
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a7748a24
Commit
a7748a24
authored
1 year ago
by
Thulani Hewavithana (qnm481)
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Update README.md
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a7748a24
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@@ -300,15 +300,15 @@ The modified\_chr\_names{k+1}.xlsx file holds the
...
@@ -300,15 +300,15 @@ The modified\_chr\_names{k+1}.xlsx file holds the
replaced gene id
\'
s with there corresponding chromosome names which they
replaced gene id
\'
s with there corresponding chromosome names which they
bellong to if they are not already placed inside the subgenome columns (to detect the genes that has been removed based on density threshold):
bellong to if they are not already placed inside the subgenome columns (to detect the genes that has been removed based on density threshold):
Gene_id N1 N1.r N2 N2.r N3 N3.r N4 N4.r N5 N5.r N6 N6.r N7 N7.r
Gene_id N1 N1.r N2 N2.r N3 N3.r N4 N4.r N5 N5.r N6 N6.r N7 N7.r
AT1G01900 0 0 0 0 0 0 0 0 0 1 0 0 0 0
AT1G01900 0 0 0 0 0 0 0 0 0 1 0 0 0 0
AT1G01910 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01910 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01920 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01920 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01930 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01930 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01940 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01940 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01950 0 0 0 0 0 0 0 0 0 0 N6 0 0 0
AT1G01950 0 0 0 0 0 0 0 0 0 0 N6 0 0 0
AT1G01960 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01960 0 0 0 0 0 0 0 0 0 0 0 1 0 0
AT1G01970 0 0 0 0 0 0 0 0 0 1 0 0 0 0
AT1G01970 0 0 0 0 0 0 0 0 0 1 0 0 0 0
The subgenome
\_
placement
\_
blocks.all{k+1}.xlsx file holds the placement
The subgenome
\_
placement
\_
blocks.all{k+1}.xlsx file holds the placement
of genes in subgenomes optimal for each subgenome considering the subgenome separation optimal for each subgenome in step 4:
of genes in subgenomes optimal for each subgenome considering the subgenome separation optimal for each subgenome in step 4:
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