diff --git a/README.md b/README.md index 7839f526a56ac0061b0f6ac59ede1a89710b4ee6..cab6cedbfdd05b5705db0717b7dc4ea856645401 100644 --- a/README.md +++ b/README.md @@ -300,15 +300,15 @@ The modified\_chr\_names{k+1}.xlsx file holds the replaced gene id\'s with there corresponding chromosome names which they bellong to if they are not already placed inside the subgenome columns (to detect the genes that has been removed based on density threshold): -Gene_id N1 N1.r N2 N2.r N3 N3.r N4 N4.r N5 N5.r N6 N6.r N7 N7.r -AT1G01900 0 0 0 0 0 0 0 0 0 1 0 0 0 0 -AT1G01910 0 0 0 0 0 0 0 0 0 0 0 1 0 0 -AT1G01920 0 0 0 0 0 0 0 0 0 0 0 1 0 0 -AT1G01930 0 0 0 0 0 0 0 0 0 0 0 1 0 0 -AT1G01940 0 0 0 0 0 0 0 0 0 0 0 1 0 0 -AT1G01950 0 0 0 0 0 0 0 0 0 0 N6 0 0 0 -AT1G01960 0 0 0 0 0 0 0 0 0 0 0 1 0 0 -AT1G01970 0 0 0 0 0 0 0 0 0 1 0 0 0 0 + Gene_id N1 N1.r N2 N2.r N3 N3.r N4 N4.r N5 N5.r N6 N6.r N7 N7.r + AT1G01900 0 0 0 0 0 0 0 0 0 1 0 0 0 0 + AT1G01910 0 0 0 0 0 0 0 0 0 0 0 1 0 0 + AT1G01920 0 0 0 0 0 0 0 0 0 0 0 1 0 0 + AT1G01930 0 0 0 0 0 0 0 0 0 0 0 1 0 0 + AT1G01940 0 0 0 0 0 0 0 0 0 0 0 1 0 0 + AT1G01950 0 0 0 0 0 0 0 0 0 0 N6 0 0 0 + AT1G01960 0 0 0 0 0 0 0 0 0 0 0 1 0 0 + AT1G01970 0 0 0 0 0 0 0 0 0 1 0 0 0 0 The subgenome\_placement\_blocks.all{k+1}.xlsx file holds the placement of genes in subgenomes optimal for each subgenome considering the subgenome separation optimal for each subgenome in step 4: