Output struc

fixed program segfaulting on one cpu

Also added file for setting up a read the docs page

Added link to a read-the-docs page

Configuration.py generates the file if it does not exist

Sorted Scripts
Created Configuration Script for Submitting Jobs

Started configuration.py to streamline job submissions

No more booleans are requried to ensure files have been created and HRUs have had their
pamarameters written