Update README.md

README.md

@@ -53,8 +53,8 @@ To use SyntenyLink, ensure you have the following requirements:
 1. Clone this repository to your local machine:
 
 ```bash
-git clone https://github.com/USask-BINFO/AcrTransAct.git
-cd AcrTransAct
+git clone git@git.cs.usask.ca:qnm481/syntenylink.git
+cd SyntenyLink
 ```
 
 2. Install the required dependencies:
@@ -66,11 +66,11 @@ pip install -r requirements.txt
 3. Reproduce all the experiments:
 
 ```bash
-bash code/scripts/training.bash
+python3 main_script.py -i abc_synteny.success.colinear -g -m -n -gt abc_groundtruth.xlsx -c abc_synteny.all.chains -bl abc_blastn.blast -w1s1 -w2s1 -w1s2 -w2s2 -w1s3 -w2s3
 ```
 ## Usage 🚀
 
-Utilize this repository to replicate our experiments and explore the functionalities of AcrTransAct. The codebase is organized to help you easily navigate through different components and reproduce our results.
+Utilize this repository to replicate our experiments and explore the functionalities of SyntenyLink. The codebase is organized to help you easily navigate through different components and reproduce our results.
 
 
 The following is the list of executable programs