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Commit b0070b20 authored by Kyle's avatar Kyle
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added makefile and lookup type

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build/makefile_sundials 0 → 100644
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#### parent directory of the 'build' directory ####
ROOT_DIR = /Summa-Actors
#### Compilers ####
FC = gfortran # Fortran
CC = g++ # C++
DIR_SUNDIALS=/code/sundials/instdir
INC_SUNDIALS=-I$(DIR_SUNDIALS)/include -I$(DIR_SUNDIALS)/fortran
LIB_SUNDIALS=-L$(DIR_SUNDIALS)/lib -lsundials_fnvecmanyvector_mod -lsundials_fida_mod -lsundials_fnvecserial_mod -lsundials_fsunlinsoldense_mod -lsundials_fsunmatrixdense_mod
#### Includes AND Libraries ####
INCLUDES = -I/usr/include -I/usr/local/include $(INC_SUNDIALS)
LIBRARIES = -L/usr/lib -L/usr/local/lib -lnetcdff -lopenblas $(LIB_SUNDIALS)
ACTORS_INCLUDES = -I/usr/include -I/usr/local/include $(INC_SUNDIALS)
ACTORS_LIBRARIES = -L/usr/lib -L/usr/local/lib -L/Summa-Actors/bin -lcaf_core -lcaf_io -lsumma -lopenblas -lnetcdff $(LIB_SUNDIALS)
# Production runs
FLAGS_NOAH = -g -O3 -ffree-form -ffree-line-length-none -fmax-errors=0 -fPIC -Wfatal-errors
FLAGS_COMM = -g -O3 -ffree-line-length-none -fmax-errors=0 -fPIC -Wfatal-errors
FLAGS_SUMMA = -g -O3 -ffree-line-length-none -fmax-errors=0 -fPIC -Wfatal-errors
FLAGS_ACTORS = -g -O3 -Wfatal-errors -std=c++17
# Debug runs
# FLAGS_NOAH = -g -O0 -ffree-form -ffree-line-length-none -fmax-errors=0 -fbacktrace -Wno-unused -Wno-unused-dummy-argument -fPIC
# FLAGS_COMM = -g -O0 -Wall -ffree-line-length-none -fmax-errors=0 -fbacktrace -fcheck=bounds -fPIC
# FLAGS_SUMMA = -g -O0 -Wall -ffree-line-length-none -fmax-errors=0 -fbacktrace -fcheck=bounds -fPIC
# FLAGS_ACTORS = -g -O0 -Wall -std=c++17
#========================================================================
# PART 1: Define directory paths
#========================================================================
# Core directory that contains source code
F_KORE_DIR = $(ROOT_DIR)/build/source
# Location of the compiled modules
MOD_PATH = $(ROOT_DIR)/build
# Define the directory for the executables
EXE_PATH = $(ROOT_DIR)/bin
####################################################################################################
###################################### Assemble Fortran Files ######################################
####################################################################################################
# Define directories
DRIVER_DIR = $(F_KORE_DIR)/driver
HOOKUP_DIR = $(F_KORE_DIR)/hookup
NETCDF_DIR = $(F_KORE_DIR)/netcdf
DSHARE_DIR = $(F_KORE_DIR)/dshare
NUMREC_DIR = $(F_KORE_DIR)/numrec
NOAHMP_DIR = $(F_KORE_DIR)/noah-mp
ENGINE_DIR = $(F_KORE_DIR)/engine
ACTORS_DIR = $(F_KORE_DIR)/actors
JOB_ACTOR_DIR = $(ACTORS_DIR)/job_actor
FILE_ACCESS_DIR = $(ACTORS_DIR)/file_access_actor
HRU_ACTOR_DIR = $(ACTORS_DIR)/hru_actor
GRU_ACTOR_DIR = $(ACTORS_DIR)/gru_actor
# utilities
SUMMA_NRUTIL= \
nrtype.f90 \
f2008funcs.f90 \
nr_utility.f90
NRUTIL = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_NRUTIL))
# Numerical recipes procedures
# NOTE: all numerical recipes procedures are now replaced with free versions
SUMMA_NRPROC= \
expIntegral.f90 \
spline_int.f90
NRPROC = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_NRPROC))
# Hook-up modules (set files and directory paths)
SUMMA_HOOKUP= \
ascii_util.f90 \
summaActors_FileManager.f90
HOOKUP = $(patsubst %, $(HOOKUP_DIR)/%, $(SUMMA_HOOKUP))
# Data modules
SUMMA_DATAMS= \
multiconst.f90 \
var_lookup.f90 \
data_types.f90 \
globalData.f90 \
flxMapping.f90 \
get_ixname.f90
DATAMS = $(patsubst %, $(DSHARE_DIR)/%, $(SUMMA_DATAMS))
SUMMA_DEPEND_ON_FILEMANAGER= \
popMetadat.f90 \
outpt_stat.f90
DEPEND_ON_FILEMANAGER = $(patsubst %, $(DSHARE_DIR)/%, $(SUMMA_DEPEND_ON_FILEMANAGER))
# utility modules
SUMMA_UTILMS= \
time_utils.f90 \
mDecisions.f90 \
snow_utils.f90 \
soil_utils.f90 \
updatState.f90 \
matrixOper.f90
UTILMS = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_UTILMS))
# Model guts
SUMMA_MODGUT= \
MODGUT = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_MODGUT))
# Solver
SUMMA_SOLVER= \
vegPhenlgy.f90 \
diagn_evar.f90 \
stomResist.f90 \
groundwatr.f90 \
vegSWavRad.f90 \
vegNrgFlux.f90 \
ssdNrgFlux.f90 \
vegLiqFlux.f90 \
snowLiqFlx.f90 \
soilLiqFlx.f90 \
bigAquifer.f90 \
computFlux.f90 \
computResid.f90 \
computJacob.f90 \
eval8summa.f90 \
summaSolve.f90 \
systemSolv.f90 \
varSubstep.f90 \
opSplittin.f90 \
coupled_em.f90
SOLVER = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_SOLVER))
# Interface code for Fortran-C++
SUMMA_INTERFACE= \
cppwrap_datatypes.f90 \
cppwrap_auxiliary.f90 \
cppwrap_metadata.f90 \
INTERFACE = $(patsubst %, $(ACTORS_DIR)/global/%, $(SUMMA_INTERFACE))
SUMMA_FILEACCESS_INTERFACE = \
initOutputStruc.f90 \
deallocateOutputStruc.f90 \
cppwrap_fileAccess.f90 \
read_attribute_all_hru.f90 \
read_param_all_hru.f90
FILEACCESS_INTERFACE = $(patsubst %, $(FILE_ACCESS_DIR)/%, $(SUMMA_FILEACCESS_INTERFACE))
SUMMA_JOB_INTERFACE = \
job_actor.f90
JOB_INTERFACE = $(patsubst %, $(JOB_ACTOR_DIR)/%, $(SUMMA_JOB_INTERFACE))
SUMMA_HRU_INTERFACE = \
cppwrap_hru.f90
HRU_INTERFACE = $(patsubst %, $(HRU_ACTOR_DIR)/%, $(SUMMA_HRU_INTERFACE))
SUMMA_GRU_INTERFACE = \
gru_actor.f90 \
GRU_INTERFACE = $(patsubst %, $(GRU_ACTOR_DIR)/%, $(SUMMA_GRU_INTERFACE))
# Define routines for SUMMA preliminaries
SUMMA_PRELIM= \
conv_funcs.f90 \
sunGeomtry.f90 \
convE2Temp.f90 \
allocspaceActors.f90 \
alloc_file_access.f90\
checkStruc.f90 \
childStruc.f90 \
ffile_info.f90 \
read_attribute.f90 \
read_pinit.f90 \
pOverwrite.f90 \
read_paramActors.f90 \
paramCheck.f90 \
check_icondActors.f90 \
# allocspace.f90
PRELIM = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_PRELIM))
SUMMA_NOAHMP= \
module_model_constants.F \
module_sf_noahutl.F \
module_sf_noahlsm.F \
module_sf_noahmplsm.F
NOAHMP = $(patsubst %, $(NOAHMP_DIR)/%, $(SUMMA_NOAHMP))
# Define routines for the SUMMA model runs
SUMMA_MODRUN = \
indexState.f90 \
getVectorz.f90 \
updateVars.f90 \
var_derive.f90 \
read_forcingActors.f90 \
access_forcing.f90\
access_write.f90 \
derivforce.f90 \
snowAlbedo.f90 \
canopySnow.f90 \
tempAdjust.f90 \
snwCompact.f90 \
layerMerge.f90 \
layerDivide.f90 \
volicePack.f90 \
qTimeDelay.f90
MODRUN = $(patsubst %, $(ENGINE_DIR)/%, $(SUMMA_MODRUN))
# Define NetCDF routines
# OutputStrucWrite is not a netcdf subroutine and should be
# moved
SUMMA_NETCDF = \
netcdf_util.f90 \
def_output.f90 \
outputStrucWrite.f90 \
writeOutput.f90 \
read_icondActors.f90
NETCDF = $(patsubst %, $(NETCDF_DIR)/%, $(SUMMA_NETCDF))
# ... stitch together common programs
COMM_ALL = $(NRUTIL) $(NRPROC) $(DATAMS) $(INTERFACE) $(HOOKUP) $(DEPEND_ON_FILEMANAGER) $(UTILMS)
# ... stitch together SUMMA programs
SUMMA_ALL = $(NETCDF) $(PRELIM) $(MODRUN) $(SOLVER)
# Define the driver routine
SUMMA_DRIVER= \
summaActors_type.f90 \
summaActors_util.f90 \
summaActors_globalData.f90 \
summaActors_init.f90 \
SummaActors_setup.f90 \
summaActors_restart.f90 \
summaActors_forcing.f90 \
SummaActors_modelRun.f90 \
summaActors_alarms.f90 \
summaActors_wOutputStruc.f90
DRIVER = $(patsubst %, $(DRIVER_DIR)/%, $(SUMMA_DRIVER))
####################################################################################################
###################################### Assemble Fortran Files ######################################
####################################################################################################
####################################################################################################
######################################## Assemble C++ Files ########################################
####################################################################################################
INCLUDE_DIR = /Summa-Actors/build/includes
SOURCE_DIR = /Summa-Actors/build/source/actors
GLOBAL_INCLUDES = -I$(INCLUDE_DIR)/global
GLOBAL = $(SOURCE_DIR)/global/global.cpp
TIMEINFO = $(SOURCE_DIR)/global/timing_info.cpp
SUMMA_ACTOR_INCLUDES = -I$(INCLUDE_DIR)/summa_actor
SUMMA_ACTOR = $(SOURCE_DIR)/summa_actor/summa_actor.cpp
SUMMA_CLIENT = $(SOURCE_DIR)/summa_actor/summa_client.cpp
SUMMA_SERVER = $(SOURCE_DIR)/summa_actor/summa_server.cpp
BATCH_MANGER = $(SOURCE_DIR)/summa_actor/batch_manager.cpp
CLIENT_MANAGER = $(SOURCE_DIR)/summa_actor/client.cpp
GRU_ACTOR_INCLUDES = -I$(INCLUDE_DIR)/gru_actor
GRU_ACTOR = $(SOURCE_DIR)/gru_actor/gru_actor.cpp
JOB_ACTOR_INCLUDES = -I$(INCLUDE_DIR)/job_actor
JOB_ACTOR = $(SOURCE_DIR)/job_actor/job_actor.cpp
GRUinfo = $(SOURCE_DIR)/job_actor/GRUinfo.cpp
FILE_ACCESS_ACTOR_INCLUDES = -I$(INCLUDE_DIR)/file_access_actor
FILE_ACCESS_ACTOR = $(SOURCE_DIR)/file_access_actor/file_access_actor.cpp
FORCING_FILE_INFO = $(SOURCE_DIR)/file_access_actor/forcing_file_info.cpp
OUTPUT_MANAGER = $(SOURCE_DIR)/file_access_actor/output_manager.cpp
HRU_ACTOR_INCLUDES = -I$(INCLUDE_DIR)/hru_actor
HRU_ACTOR = $(SOURCE_DIR)/hru_actor/hru_actor.cpp
MAIN = $(F_KORE_DIR)/actors/main.cpp
ACTOR_TEST = $(F_KORE_DIR)/testing/testing_main.cc
####################################################################################################
######################################## Assemble C++ Files ########################################
####################################################################################################
#========================================================================
# PART 3: compilation
#======================================================================
all: fortran cpp
fortran: compile_noah compile_comm compile_summa link clean_fortran
cpp: compile_globals compile_hru_actor compile_gru_actor compile_file_access_actor compile_job_actor compile_summa_actor \
compile_summa_client compile_summa_server compile_main link_cpp clean_cpp
test: actors_test actors_testLink actorsClean
###################################################################################################################
############################################## COMPILE SUMMA-Fortran ##############################################
###################################################################################################################
compile_noah:
$(FC) $(FLAGS_NOAH) -c $(NRUTIL) $(NOAHMP)
# compile common routines
compile_comm:
$(FC) $(FLAGS_COMM) -c $(COMM_ALL) $(INCLUDES)
# compile SUMMA routines
compile_summa:
$(FC) $(FLAGS_SUMMA) -c $(SUMMA_ALL) $(DRIVER) $(JOB_INTERFACE) $(FILEACCESS_INTERFACE) $(HRU_INTERFACE) $(GRU_INTERFACE) $(INCLUDES)
# generate library
link:
$(FC) -shared *.o -o libsumma.so
mv libsumma.so $(ROOT_DIR)/bin
# Remove object files
clean_fortran:
rm -f *.o *.mod soil_veg_gen_parm__genmod.f90
###################################################################################################################
############################################## COMPILE SUMMA-Fortran ##############################################
###################################################################################################################
###################################################################################################################
################################################ COMPILE SUMMA-C++ ################################################
###################################################################################################################
compile_globals:
$(CC) $(FLAGS_ACTORS) -c $(GLOBAL) $(TIMEINFO) $(GLOBAL_INCLUDES)
compile_gru_actor:
$(CC) $(FLAGS_ACTORS) -c $(GRU_ACTOR) $(HRU_ACTOR_INCLUDES) $(GRU_ACTOR_INCLUDES) $(GLOBAL_INCLUDES) $(ACTORS_INCLUDES)
compile_hru_actor:
$(CC) $(FLAGS_ACTORS) -c $(HRU_ACTOR) $(HRU_ACTOR_INCLUDES) $(GLOBAL_INCLUDES) $(ACTORS_INCLUDES)
compile_file_access_actor:
$(CC) $(FLAGS_ACTORS) -c $(FILE_ACCESS_ACTOR) $(FORCING_FILE_INFO) $(OUTPUT_MANAGER) \
$(FILE_ACCESS_ACTOR_INCLUDES) $(GLOBAL_INCLUDES) $(ACTORS_INCLUDES)
compile_job_actor:
$(CC) $(FLAGS_ACTORS) -c $(JOB_ACTOR) $(GRUinfo) $(JOB_ACTOR_INCLUDES) $(GLOBAL_INCLUDES) $(ACTORS_INCLUDES) \
$(FILE_ACCESS_ACTOR_INCLUDES) $(HRU_ACTOR_INCLUDES) $(GRU_ACTOR_INCLUDES)
compile_summa_actor:
$(CC) $(FLAGS_ACTORS) -c $(SUMMA_ACTOR) $(SUMMA_ACTOR_INCLUDES) $(GLOBAL_INCLUDES) $(ACTORS_INCLUDES) \
$(JOB_ACTOR_INCLUDES)
compile_summa_client:
$(CC) $(FLAGS_ACTORS) -c $(SUMMA_CLIENT) $(SUMMA_ACTOR_INCLUDES) $(GLOBAL_INCLUDES)
compile_summa_server:
$(CC) $(FLAGS_ACTORS) -c $(SUMMA_SERVER) $(BATCH_MANGER) $(CLIENT_MANAGER) $(SUMMA_ACTOR_INCLUDES) $(GLOBAL_INCLUDES)
compile_main:
$(CC) $(FLAGS_ACTORS) -c $(MAIN) $(GLOBAL_INCLUDES) $(SUMMA_ACTOR_INCLUDES) $(JOB_ACTOR_INCLUDES)
link_cpp:
$(CC) $(FLAGS_ACTORS) -o summaMain *.o $(ACTORS_LIBRARIES)
mv summaMain $(ROOT_DIR)/bin
clean_cpp:
rm *.o
###################################################################################################################
################################################ COMPILE SUMMA-C++ ################################################
###################################################################################################################
###################################################################################################################
################################################## COMPILE TESTS ##################################################
###################################################################################################################
actors_test:
$(CC) $(FLAGS_ACTORS) -c $(ACTOR_TEST) -std=c++17 $(ACTORS_INCLUDES)
actors_testLink:
$(CC) -o summaTest *.o $(ACTORS_LIBRARIES)
clean_lib:
rm *.so
build/source/dshare/data_types.f90
+ 12
− 0
View file @ b0070b20
...@@ -412,6 +412,18 @@ endtype var_time_ilength ...@@ -412,6 +412,18 @@ endtype var_time_ilength
type(hru_time_intVec),allocatable :: gru(:) type(hru_time_intVec),allocatable :: gru(:)
endtype gru_hru_time_intVec endtype gru_hru_time_intVec
! Sundials lookup table type
type, public :: dLookup
real(rkind),allocatable :: lookup(:) ! lookup(:)
endtype dLookup
! ** double precision type for a variable number of soil layers; variable length
type, public :: vLookup
type(dLookup),allocatable :: var(:) ! var(:)%lookup(:)
endtype vLookup
type, public :: zLookup
type(vLookup),allocatable :: z(:) ! z(:)%var(:)%lookup(:)
endtype zLookup
type, public :: summa_output_type type, public :: summa_output_type
! define the statistics structures ! define the statistics structures
......
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