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  • cpv616/module1_2
  • nma904/module1_2
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with 27 additions and 2 deletions
module1_2/inputData/project-buxus-tree3/35405_35405.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
View file @ cf29989e
35405_35405.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
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module1_2/inputData/project-buxus-tree3/35405_54057.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
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35405_54057.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/35405_57266.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
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35405_57266.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/35405_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
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35405_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/54057_54057.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
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54057_54057.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/54057_57266.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
View file @ cf29989e
54057_57266.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/54057_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
View file @ cf29989e
54057_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/57266_57266.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
View file @ cf29989e
57266_57266.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/57266_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
View file @ cf29989e
57266_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/57268_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt 0 → 120000
View file @ cf29989e
57268_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/Genomes.txt 0 → 100644
View file @ cf29989e
#genomeID genomeName ancestor numChr
54057 Amaranthus 1 16
19990 Vitis 1 19
57266 Tetracentron 3 19
57268 Buxus 2 14
28620 Aquilegea 4 7
35405 Nelumbo 4 8
module1_2/inputData/project-buxus-tree3/karyotype/karyotype_19990_Vitis.txt 0 → 120000
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karyotype_19990_Vitis.txt
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module1_2/inputData/project-buxus-tree3/karyotype/karyotype_28620_Aquilegea.txt 0 → 120000
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karyotype_28620_Aquilegea.txt
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module1_2/inputData/project-buxus-tree3/karyotype/karyotype_35405_Nelumbo.txt 0 → 120000
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karyotype_35405_Nelumbo.txt
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module1_2/inputData/project-buxus-tree3/karyotype/karyotype_54057_Amaranthus.txt 0 → 120000
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karyotype_54057_Amaranthus.txt
\ No newline at end of file
module1_2/inputData/project-buxus-tree3/karyotype/karyotype_57266_Tetracentron.txt 0 → 120000
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karyotype_57266_Tetracentron.txt
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module1_2/inputData/project-buxus-tree3/karyotype/karyotype_57268_Buxus.txt 0 → 120000
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karyotype_57268_Buxus.txt
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module1_2/inputData/project-buxus-tree3/phyloTree.txt 0 → 100644
View file @ cf29989e
# Tree in Newick Format:
((((Vitis_19990, Amaranthus_54057), Buxus_57268), Tetracentron_57266), (Aquilegea_28620, Nelumbo_35405))
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module1_2/inputData/project-buxus/Genomes.txt
View file @ cf29989e
......@@ -4,4 +4,4 @@
57266 Tetracentron 2 19
57268 Buxus 2 14
28620 Aquilegea 4 7
35405 Nelumbo 4 8
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35405 Nelumbo 4 8
module1_2/inputData/project-buxus/phyloTree.txt
View file @ cf29989e
# Tree in Newick Format:
(((Aquilegea_28620, Nelumbo_35405), (Tetracentron_57266, Buxus_57268)), (Vitis_19990, Amaranthus_54057))
(((Vitis_19990, Amaranthus_54057), (Tetracentron_57266, Buxus_57268)), (Aquilegea_28620, Nelumbo_35405))