minor updates

module1_2/inputData/project-buxus/Genomes.txt

-#genomeID	genomeName	ancestor	numChr	gff
+#genomeID	genomeName	ancestor	numChr
 28620	Aquilegea	1	7	
 35405	Nelumbo	1	8
 57266	Tetracentron	2	19

module1_2/inputData/project-buxus/phyloTree.txt

 # Tree in Newick Format:
-#(((28620, 35405), (57266, 57268)), (19990, 54057))
 (((Aquilegea_28620, Nelumbo_35405), (Tetracentron_57266, Buxus_57268)), (Vitis_19990, Amaranthus_54057))

module1_2/inputData/project-monocots/Genomes.txt

-#genomeID	genomeName	ancestor	numChr	gff
-25734	Ananas	4	25	Ananas_comosus_pineapple_annos1-cds0-id_typename-nu1-upa1-add_chr0.gid25734.gff
-33018	Elaeis	4	16	Elaeis_guineensis_annos1-cds0-id_typename-nu1-upa1-add_chr0.gid33018.gff
-33908	Asparagus	3	10	Asparagus_officinalis_garden_asparagus_annos1-cds0-id_typename-nu1-upa1-add_chr0.gid33908.gff
-51051	Dioscorea	2	21	Dioscorea_rotundata_annos1-cds0-id_typename-nu1-upa1-add_chr0.gid51051.gff
-51364	Spirodela	1	20	Spirodela_polyrhiza_Greater_Duckweed_strain_9509_annos1-cds0-id_typename-nu1-upa1-add_chr0.gid51364.gff
-54711	Acorus	1	12	Acorus_americanus_annos1-cds0-id_typename-nu1-upa1-add_chr0.gid54711.gff
+#genomeID	genomeName	ancestor	numChr
+25734	Ananas	4	25
+33018	Elaeis	4	16
+33908	Asparagus	3	10
+51051	Dioscorea	2	21
+51364	Spirodela	1	20
+54711	Acorus	1	12

module1_2/inputData/project-monocots/phyloTree.txt

 #treenode_number	window_size	genome_number	gf_number
 # Tree in Newick Format:
-(((51364, 54711), 51051), ((25734, 33018), 33908))
-#(((Spirodela_51364, Acorus_54711), Dioscorea_51051), ((Ananas_25734, Elaeis_33018), Asparagus_33908))
+#(((51364, 54711), 51051), ((25734, 33018), 33908))
+(((Spirodela_51364, Acorus_54711), Dioscorea_51051), ((Ananas_25734, Elaeis_33018), Asparagus_33908))
 #51364	54711	25734,33018,33908,51051
 #51051	51364,54711	25734,33018,33908
 #33908	25734,33018	51051,51364,54711