correct karyotype chromosome labels

module1_2/inputData/project-buxus-tree2/57268_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt

-57268_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/Genomes.txt

-#genomeID	genomeName	ancestor	numChr
-54057	Amaranthus	1	16
-19990	Vitis	1	19
-57266	Tetracentron	2	19
-57268	Buxus	3	14
-28620	Aquilegea	4	7	
-35405	Nelumbo	4	8

module1_2/inputData/project-buxus-tree2/karyotype/karyotype_19990_Vitis.txt

-karyotype_19990_Vitis.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/karyotype/karyotype_28620_Aquilegea.txt

-karyotype_28620_Aquilegea.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/karyotype/karyotype_35405_Nelumbo.txt

-karyotype_35405_Nelumbo.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/karyotype/karyotype_54057_Amaranthus.txt

-karyotype_54057_Amaranthus.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/karyotype/karyotype_57266_Tetracentron.txt

-karyotype_57266_Tetracentron.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/karyotype/karyotype_57268_Buxus.txt

-karyotype_57268_Buxus.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree2/phyloTree.txt

-# Tree in Newick Format:
-((((Vitis_19990, Amaranthus_54057), Tetracentron_57266), Buxus_57268), (Aquilegea_28620, Nelumbo_35405))
\ No newline at end of file

module1_2/inputData/project-buxus-tree3/karyotype/karyotype_19990_Vitis.txt

-karyotype_19990_Vitis.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree3/karyotype/karyotype_28620_Aquilegea.txt

-karyotype_28620_Aquilegea.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree3/karyotype/karyotype_35405_Nelumbo.txt

-karyotype_35405_Nelumbo.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree3/karyotype/karyotype_54057_Amaranthus.txt

-karyotype_54057_Amaranthus.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree3/karyotype/karyotype_57266_Tetracentron.txt

-karyotype_57266_Tetracentron.txt
\ No newline at end of file

module1_2/inputData/project-buxus-tree3/karyotype/karyotype_57268_Buxus.txt

-karyotype_57268_Buxus.txt
\ No newline at end of file

module1_2/inputData/project-buxus/config.yaml

 # project name
-project_name: "project-buxus"
+project_name: "project-monoploidvitis"
 
 # input : path to genome information file
 input_file:

module1_2/inputData/project-buxus/karyotype/karyotype_28620_Aquilegea.txt

 chr	size
-1	44842349
-2	43181631
-3	42709656
-4	45830269
-5	44547717
-6	30424310
-7	43571201
+01	44842349
+02	43181631
+03	42709656
+04	45830269
+05	44547717
+06	30424310
+07	43571201
\ No newline at end of file

module1_2/inputData/project-buxus/karyotype/karyotype_54057_Amaranthus.txt

 chr	size
-1	66852109
-2	56993749
-3	53037347
-4	46657859
-5	49084773
-6	43088275
-7	48737580
-8	38952370
-9	42217412
-10	38792567
-11	35165491
-12	36098860
-13	42038781
-14	31890052
-15	31283708
-16	28097066
+Scaffold_1	66852109
+Scaffold_2	56993749
+Scaffold_3	53037347
+Scaffold_4	46657859
+Scaffold_5	49084773
+Scaffold_6	43088275
+Scaffold_7	48737580
+Scaffold_8	38952370
+Scaffold_9	42217412
+Scaffold_10	38792567
+Scaffold_11	35165491
+Scaffold_12	36098860
+Scaffold_13	42038781
+Scaffold_14	31890052
+Scaffold_15	31283708
+Scaffold_16	28097066

module1_2/inputData/project-buxus/karyotype/karyotype_57266_Tetracentron.txt

 chr	size
-1	71636068
-2	61028666
-3	60509202
-4	60503477
-5	57360873
-6	57237853
-7	55084551
-8	54617247
-9	43377092
-10	39584299
-11	41470264
-12	39476280
-13	37141219
-14	32764610
-15	32026996
-16	34647973
-17	30205688
-18	23619228
-19	24051190
+PGA_scaffold1	71636068
+PGA_scaffold2	61028666
+PGA_scaffold3	60509202
+PGA_scaffold4	60503477
+PGA_scaffold5	57360873
+PGA_scaffold6	57237853
+PGA_scaffold7	55084551
+PGA_scaffold8	54617247
+PGA_scaffold9	43377092
+PGA_scaffold10	39584299
+PGA_scaffold11	41470264
+PGA_scaffold12	39476280
+PGA_scaffold13	37141219
+PGA_scaffold14	32764610
+PGA_scaffold15	32026996
+PGA_scaffold16	34647973
+PGA_scaffold17	30205688
+PGA_scaffold18	23619228
+PGA_scaffold19	24051190
\ No newline at end of file

module1_2/inputData/project-buxus/karyotype/karyotype_57268_Buxus.txt

 chr	size
-1	85284675
-2	73410427
-3	56652330
-4	56695734
-5	39318823
-6	44333340
-7	54024499
-8	52311697
-9	69613783
-10	43959239
-11	55904807
-12	40207247
-13	39557457
-14	51583301
+PGA_scaffold_1	85284675
+PGA_scaffold_2	73410427
+PGA_scaffold_3	56652330
+PGA_scaffold_4	56695734
+PGA_scaffold_5	39318823
+PGA_scaffold_6	44333340
+PGA_scaffold_7	54024499
+PGA_scaffold_8	52311697
+PGA_scaffold_9	69613783
+PGA_scaffold_10	43959239
+PGA_scaffold_11	55904807
+PGA_scaffold_12	40207247
+PGA_scaffold_13	39557457
+PGA_scaffold_14	51583301
\ No newline at end of file