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Commit 7da209fc authored by Lingling Jin (lij313)'s avatar Lingling Jin (lij313)
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correct karyotype chromosome labels

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with 57 additions and 79 deletions
57268_57268.CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt
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#genomeID genomeName ancestor numChr
54057 Amaranthus 1 16
19990 Vitis 1 19
57266 Tetracentron 2 19
57268 Buxus 3 14
28620 Aquilegea 4 7
35405 Nelumbo 4 8
karyotype_19990_Vitis.txt
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karyotype_28620_Aquilegea.txt
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karyotype_35405_Nelumbo.txt
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karyotype_54057_Amaranthus.txt
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karyotype_57266_Tetracentron.txt
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karyotype_57268_Buxus.txt
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# Tree in Newick Format:
((((Vitis_19990, Amaranthus_54057), Tetracentron_57266), Buxus_57268), (Aquilegea_28620, Nelumbo_35405))
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karyotype_19990_Vitis.txt
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karyotype_28620_Aquilegea.txt
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karyotype_35405_Nelumbo.txt
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karyotype_54057_Amaranthus.txt
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karyotype_57266_Tetracentron.txt
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karyotype_57268_Buxus.txt
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# project name
project_name: "project-buxus"
project_name: "project-monoploidvitis"
# input : path to genome information file
input_file:
......
chr size
1 44842349
2 43181631
3 42709656
4 45830269
5 44547717
6 30424310
7 43571201
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01 44842349
02 43181631
03 42709656
04 45830269
05 44547717
06 30424310
07 43571201
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chr size
1 66852109
2 56993749
3 53037347
4 46657859
5 49084773
6 43088275
7 48737580
8 38952370
9 42217412
10 38792567
11 35165491
12 36098860
13 42038781
14 31890052
15 31283708
16 28097066
Scaffold_1 66852109
Scaffold_2 56993749
Scaffold_3 53037347
Scaffold_4 46657859
Scaffold_5 49084773
Scaffold_6 43088275
Scaffold_7 48737580
Scaffold_8 38952370
Scaffold_9 42217412
Scaffold_10 38792567
Scaffold_11 35165491
Scaffold_12 36098860
Scaffold_13 42038781
Scaffold_14 31890052
Scaffold_15 31283708
Scaffold_16 28097066
chr size
1 71636068
2 61028666
3 60509202
4 60503477
5 57360873
6 57237853
7 55084551
8 54617247
9 43377092
10 39584299
11 41470264
12 39476280
13 37141219
14 32764610
15 32026996
16 34647973
17 30205688
18 23619228
19 24051190
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PGA_scaffold1 71636068
PGA_scaffold2 61028666
PGA_scaffold3 60509202
PGA_scaffold4 60503477
PGA_scaffold5 57360873
PGA_scaffold6 57237853
PGA_scaffold7 55084551
PGA_scaffold8 54617247
PGA_scaffold9 43377092
PGA_scaffold10 39584299
PGA_scaffold11 41470264
PGA_scaffold12 39476280
PGA_scaffold13 37141219
PGA_scaffold14 32764610
PGA_scaffold15 32026996
PGA_scaffold16 34647973
PGA_scaffold17 30205688
PGA_scaffold18 23619228
PGA_scaffold19 24051190
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chr size
1 85284675
2 73410427
3 56652330
4 56695734
5 39318823
6 44333340
7 54024499
8 52311697
9 69613783
10 43959239
11 55904807
12 40207247
13 39557457
14 51583301
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PGA_scaffold_1 85284675
PGA_scaffold_2 73410427
PGA_scaffold_3 56652330
PGA_scaffold_4 56695734
PGA_scaffold_5 39318823
PGA_scaffold_6 44333340
PGA_scaffold_7 54024499
PGA_scaffold_8 52311697
PGA_scaffold_9 69613783
PGA_scaffold_10 43959239
PGA_scaffold_11 55904807
PGA_scaffold_12 40207247
PGA_scaffold_13 39557457
PGA_scaffold_14 51583301
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