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Commit 73251920 authored by Lingling Jin (lij313)'s avatar Lingling Jin (lij313)
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addes some comments to improve readability

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......@@ -7,5 +7,5 @@
19990 Vitis 3 19
# Tree in Newick Format:
(((28620, 35405), (57266, 57268)), (19990, 54057))
#(((28620, 35405), (57266, 57268)), (19990, 54057))
(((Aquilegea_28620, Nelumbo_35405), (Tetracentron_57266, Buxus_57268)), (Vitis_19990, Amaranthus_54057))
# project name
project_name: "project-buxus"
# input : path to genome information file
input_file:
leaf_genome_info: "/Genomes.txt"
......@@ -22,8 +25,9 @@ input_path: "../inputData/"
# output path
output_path: "../outputData/"
# project name
project_name: "project-buxus"
## Global parameters
# range of percent identity of ortholog pairs
min_cutoff_weight: 65
......
......@@ -8,6 +8,7 @@
#treenode_number window_size genome_number gf_number
# Tree in Newick Format:
(((51364, 54711), 51051), ((25734, 33018), 33908))
#(((Spirodela_51364, Acorus_54711), Dioscorea_51051), ((Ananas_25734, Elaeis_33018), Asparagus_33908))
#51364 54711 25734,33018,33908,51051
#51051 51364,54711 25734,33018,33908
#33908 25734,33018 51051,51364,54711
......
# project name
project_name: "project-monocots"
# input : path to genome information file
input_file:
leaf_genome_info: "/test2.txt"
leaf_genome_info: "/Genomes.txt"
synteny_file_name: ".CDS-CDS.last.tdd10.cs0.filtered.dag.all.go_D20_g10_A5.aligncoords.gcoords.ks.txt"
synteny_file_path: "/"
jar_path: "."
......@@ -22,8 +25,8 @@ input_path: "../inputData/"
# output path
output_path: "../outputData/"
# project name
project_name: "project-monocots"
## Global parameters
# range of percent identity of ortholog pairs
min_cutoff_weight: 65
......
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