From 839501531fdabef25ddfa80ae5cbc4fc3f8f588f Mon Sep 17 00:00:00 2001
From: "Thulani Hewavithana (qnm481)" <thulani.hewavithana@usask.ca>
Date: Fri, 3 Jan 2025 14:09:36 -0600
Subject: [PATCH] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 06700c1..a681ce9 100644
--- a/README.md
+++ b/README.md
@@ -100,7 +100,7 @@ Parameter and command examples are shown below.
 1. [SyntenyLink.sh](#syntenyLink.sh) 
     - -i Input collinear file
     - -s Ploidy status. If diploid 2, tetraploid 4, hexaploid 6, octaploid 8
-    - -p Gene prefix. 
+    - -p Gene prefix (for example 'G' is the gene prefix for this gene AT1G01010; where we could separate the chromsome number part from the integer part)
     - -gt Groundtruth subgenome separation. Default is None
     - -bed Query bed file
     - -chr<i> Chromosome number for each subgenome. For example in Brassica napus chr1 is 10 and chr2 is 9
-- 
GitLab