From 791b5a8e413f2f339329d24f20f1ad891adba098 Mon Sep 17 00:00:00 2001
From: "Thulani Hewavithana (qnm481)" <qnm481@mail.usask.ca>
Date: Tue, 20 Jun 2023 12:46:57 -0600
Subject: [PATCH] Replace gap_threshold_selection.py
---
Scripts/gap_threshold_selection.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Scripts/gap_threshold_selection.py b/Scripts/gap_threshold_selection.py
index e976bd5..b1e00b1 100644
--- a/Scripts/gap_threshold_selection.py
+++ b/Scripts/gap_threshold_selection.py
@@ -28,7 +28,7 @@ def find_gaps(col, m):
return gaps
# Get the input file as an argument (collinear file)
-input_file = sys.argv[1]
+input_file = sys.argv[sys.argv.index('-i') + 1]
# Convert the collinear file to a dataframe
C_df_csv = pd.read_csv(input_file, sep=' ', header=None)
--
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