From 53b720668922ffce65f17717be97f0efc10d7f63 Mon Sep 17 00:00:00 2001
From: "Thulani Hewavithana (qnm481)" <qnm481@mail.usask.ca>
Date: Mon, 26 Jun 2023 22:28:40 -0600
Subject: [PATCH] README.md
---
README.md | 21 ++++++++++++---------
1 file changed, 12 insertions(+), 9 deletions(-)
diff --git a/README.md b/README.md
index 86635e9..9f7ed3d 100644
--- a/README.md
+++ b/README.md
@@ -71,7 +71,7 @@ results, the number of BLASTP hits for a gene should be restricted to
around top 5. When you have abc.blast ready, put them in the same
folder. Then you can simply use:
- $ python3 ./SyntenyLink_bf.pl dir/abc.blast
+ $ ./SyntenyLink_bf.pl dir/abc.blast
\- Output The execution of SyntenyLink\_bf outputs one blast file
abc\_blast\_filtered.txt, containing filtered blast hits as follows:
@@ -407,14 +407,17 @@ To run SyntenyLink\_sb.py you can simply use:
$ python3 SyntenyLink_acc.py abc_groundtruth.xlsx
\- Output The execution of SyntenyLink\_sb prints the subgenome
-placemnet accuracy of each subgenome
-
-> Exact match percentage for subgenome1: 84.15% Exact match number for
-> subgenome1: 11490 Missing genes for subgenome1: 2164 Exact match
-> percentage for subgenome2: 61.61% Exact match number for subgenome2:
-> 6062 Missing genes for subgenome2: 3778 Exact match percentage for
-> subgenome3: 65.30% Exact match number for subgenome3: 5635 Missing
-> genes for subgenome3: 2995
+placemnet accuracy of each subgenome:
+
+ Exact match percentage for subgenome1: 84.15%
+ Exact match number for subgenome1: 11490
+ Missing genes for subgenome1: 2164
+ Exact match percentage for subgenome2: 61.61%
+ Exact match number for subgenome2: 6062
+ Missing genes for subgenome2: 3778
+ Exact match percentage for subgenome3: 65.30%
+ Exact match number for subgenome3: 5635
+ Missing genes for subgenome3: 2995
Example
=======
--
GitLab