diff --git a/README.md b/README.md index 86635e960a35ee675dce30702876c64c1275af1d..9f7ed3d8cd945709962aad9acd49f58de6ceb889 100644 --- a/README.md +++ b/README.md @@ -71,7 +71,7 @@ results, the number of BLASTP hits for a gene should be restricted to around top 5. When you have abc.blast ready, put them in the same folder. Then you can simply use: - $ python3 ./SyntenyLink_bf.pl dir/abc.blast + $ ./SyntenyLink_bf.pl dir/abc.blast \- Output The execution of SyntenyLink\_bf outputs one blast file abc\_blast\_filtered.txt, containing filtered blast hits as follows: @@ -407,14 +407,17 @@ To run SyntenyLink\_sb.py you can simply use: $ python3 SyntenyLink_acc.py abc_groundtruth.xlsx \- Output The execution of SyntenyLink\_sb prints the subgenome -placemnet accuracy of each subgenome - -> Exact match percentage for subgenome1: 84.15% Exact match number for -> subgenome1: 11490 Missing genes for subgenome1: 2164 Exact match -> percentage for subgenome2: 61.61% Exact match number for subgenome2: -> 6062 Missing genes for subgenome2: 3778 Exact match percentage for -> subgenome3: 65.30% Exact match number for subgenome3: 5635 Missing -> genes for subgenome3: 2995 +placemnet accuracy of each subgenome: + + Exact match percentage for subgenome1: 84.15% + Exact match number for subgenome1: 11490 + Missing genes for subgenome1: 2164 + Exact match percentage for subgenome2: 61.61% + Exact match number for subgenome2: 6062 + Missing genes for subgenome2: 3778 + Exact match percentage for subgenome3: 65.30% + Exact match number for subgenome3: 5635 + Missing genes for subgenome3: 2995 Example =======