From b7784c0f768eb5a43eeece03321c289748239242 Mon Sep 17 00:00:00 2001
From: KyleKlenk <kyle.c.klenk@gmail.com>
Date: Thu, 24 Aug 2023 13:02:54 -0600
Subject: [PATCH] adjusted parameters that were incorrect
---
environment_setup/Dockerfile | 3 ++-
environment_setup/run_container.sh | 6 +++---
simulations/input/config_official.toml | 4 ++--
simulations/input/s1.par | 2 +-
4 files changed, 8 insertions(+), 7 deletions(-)
diff --git a/environment_setup/Dockerfile b/environment_setup/Dockerfile
index 83f091f..b4ac927 100755
--- a/environment_setup/Dockerfile
+++ b/environment_setup/Dockerfile
@@ -16,7 +16,8 @@ RUN apt-get update -y && apt-get upgrade -y && \
python3-pip \
zlib1g zlib1g-dev \
python3-testresources python-is-python3 \
- bc
+ bc \
+ screen
# Install network tools - (ping, traceroute, etc.)
RUN apt-get -y install iputils-ping libssl-dev
diff --git a/environment_setup/run_container.sh b/environment_setup/run_container.sh
index 8c66c32..aa44c27 100755
--- a/environment_setup/run_container.sh
+++ b/environment_setup/run_container.sh
@@ -4,7 +4,7 @@
# It will also mount the top level project directory into the container
# This uses the host computers file system to store the data
-SOURCE_DIR=/mnt/c/Users/kylec/Projects/Cardiac_Projects/openCARP-Actors/
-TARGET_DIR=/code/
+SOURCE_DIR=/u1/kck540/Projects/cardiac/openCARP-Actors
+TARGET_DIR=/code/openCARP-Actors
-docker run -itd --mount type=bind,source=$SOURCE_DIR,target=$TARGET_DIR opencarp-actors
\ No newline at end of file
+docker run -itd --mount source=$SOURCE_DIR,target=$TARGET_DIR opencarp-actors
\ No newline at end of file
diff --git a/simulations/input/config_official.toml b/simulations/input/config_official.toml
index 84b852f..8a26acb 100644
--- a/simulations/input/config_official.toml
+++ b/simulations/input/config_official.toml
@@ -2,7 +2,7 @@
# global parameters
output_dir = "/code/openCARP-Actors/simulations/output/"
results_file = "results.csv"
-tolerance = 1
+tolerance = 1000
# s1 parameters
s1_min = 1.0e7
@@ -14,7 +14,7 @@ s2_min = 1.0e8
s2_max = 3.0e8
s2_interval_min = 185
s2_interval_max = 205
-s2_interval_increment = 1000
+s2_interval_increment = 1
[petsc]
diff --git a/simulations/input/s1.par b/simulations/input/s1.par
index f8518b3..add405a 100644
--- a/simulations/input/s1.par
+++ b/simulations/input/s1.par
@@ -47,7 +47,7 @@ stimulus[1].zd = 100.0
################# Simulation parameters #################
bidomain = 1
-tend = 300.
+tend = 70.
spacedt = 1.0
timedt = 1.0
parab_solve = 1
--
GitLab