diff --git a/environment_setup/Dockerfile b/environment_setup/Dockerfile index 83f091fcbc862967d9d8b953927678547fe278fd..b4ac9276cc6aa0d5c89fd79a19efceeab19a3eee 100755 --- a/environment_setup/Dockerfile +++ b/environment_setup/Dockerfile @@ -16,7 +16,8 @@ RUN apt-get update -y && apt-get upgrade -y && \ python3-pip \ zlib1g zlib1g-dev \ python3-testresources python-is-python3 \ - bc + bc \ + screen # Install network tools - (ping, traceroute, etc.) RUN apt-get -y install iputils-ping libssl-dev diff --git a/environment_setup/run_container.sh b/environment_setup/run_container.sh index 8c66c32fcc486d09ae73c75e2ec0a04127060d65..aa44c274771c5d3e66197515067b937e32511d58 100755 --- a/environment_setup/run_container.sh +++ b/environment_setup/run_container.sh @@ -4,7 +4,7 @@ # It will also mount the top level project directory into the container # This uses the host computers file system to store the data -SOURCE_DIR=/mnt/c/Users/kylec/Projects/Cardiac_Projects/openCARP-Actors/ -TARGET_DIR=/code/ +SOURCE_DIR=/u1/kck540/Projects/cardiac/openCARP-Actors +TARGET_DIR=/code/openCARP-Actors -docker run -itd --mount type=bind,source=$SOURCE_DIR,target=$TARGET_DIR opencarp-actors \ No newline at end of file +docker run -itd --mount source=$SOURCE_DIR,target=$TARGET_DIR opencarp-actors \ No newline at end of file diff --git a/simulations/input/config_official.toml b/simulations/input/config_official.toml index 84b852f83e2afc347eb64b4ddf00ab8b69b67f4f..8a26acb24d709d26e324fe7a5db6f59b549505bb 100644 --- a/simulations/input/config_official.toml +++ b/simulations/input/config_official.toml @@ -2,7 +2,7 @@ # global parameters output_dir = "/code/openCARP-Actors/simulations/output/" results_file = "results.csv" -tolerance = 1 +tolerance = 1000 # s1 parameters s1_min = 1.0e7 @@ -14,7 +14,7 @@ s2_min = 1.0e8 s2_max = 3.0e8 s2_interval_min = 185 s2_interval_max = 205 -s2_interval_increment = 1000 +s2_interval_increment = 1 [petsc] diff --git a/simulations/input/s1.par b/simulations/input/s1.par index f8518b3dc25a8aa04a7e243b4c997506446b2729..add405a626522e089f4ead889684af874971fd93 100644 --- a/simulations/input/s1.par +++ b/simulations/input/s1.par @@ -47,7 +47,7 @@ stimulus[1].zd = 100.0 ################# Simulation parameters ################# bidomain = 1 -tend = 300. +tend = 70. spacedt = 1.0 timedt = 1.0 parab_solve = 1