diff --git a/build/source/actors/file_access_actor/fortran_code/writeOutputFromOutputStructure.f90 b/build/source/actors/file_access_actor/fortran_code/writeOutputFromOutputStructure.f90
index fd70be043a60cbcca4c2b9949cdee74d288f7a51..32f7308c33b09d97ce8d304fcff67dfa734539aa 100644
--- a/build/source/actors/file_access_actor/fortran_code/writeOutputFromOutputStructure.f90
+++ b/build/source/actors/file_access_actor/fortran_code/writeOutputFromOutputStructure.f90
@@ -125,20 +125,24 @@ subroutine writeOutput(handle_ncid, num_steps, start_gru, max_gru, err) bind(C,
do iGRU=start_gru, max_gru
stepCounter(:) = outputTimeStep(iGRU)%dat(:) ! We want to avoid updating outputTimeStep
do iStep=1, num_steps
- call writeBasin(ncid,iGRU,stepCounter(:),iStep,bvar_meta, &
- outputStructure(1)%bvarStat(1)%gru(iGRU)%hru(indxHRU)%var, &
- outputStructure(1)%bvarStruct(1)%gru(iGRU)%hru(indxHRU)%var, bvarChild_map, err, cmessage)
-
call writeTime(ncid,outputTimeStep(iGRU)%dat(:),iStep,time_meta, &
outputStructure(1)%timeStruct(1)%gru(iGRU)%hru(indxHRU)%var,err,cmessage)
end do ! istep
end do ! iGRU
+
+ numGRU = max_gru-start_gru + 1
! ****************************************************************************
- ! *** write data
+ ! *** write basin data
! ****************************************************************************
- numGRU = max_gru-start_gru + 1
+ call writeBasin(ncid,outputTimeStep(start_gru)%dat(:),outputTimeStepUpdate,num_steps,&
+ start_gru, max_gru, numGRU, &
+ bvar_meta,outputStructure(1)%bvarStat(1),outputStructure(1)%bvarStruct(1), &
+ bvarChild_map,err,cmessage)
+ ! ****************************************************************************
+ ! *** write data
+ ! ****************************************************************************
do iStruct=1,size(structInfo)
select case(trim(structInfo(iStruct)%structName))
case('forc')
@@ -170,6 +174,7 @@ subroutine writeOutput(handle_ncid, num_steps, start_gru, max_gru, err) bind(C,
if(err/=0)then; message=trim(message)//trim(cmessage)//'['//trim(structInfo(iStruct)%structName)//']'; return; endif
end do ! (looping through structures)
+
do iFreq = 1,maxvarFreq
outputTimeStep(start_gru)%dat(iFreq) = outputTimeStep(start_gru)%dat(iFreq) + outputTimeStepUpdate(iFreq)
end do ! ifreq
@@ -300,6 +305,7 @@ subroutine writeData(ncid,outputTimestep,outputTimestepUpdate,maxLayers,nSteps,
do iVar = 1,size(meta)
stepCounter = 0
+ ! Todo: wrap this in a function
if (meta(iVar)%varName=='time' .and. structName == 'forc')then
! get variable index
err = nf90_inq_varid(ncid%var(iFreq),trim(meta(iVar)%varName),ncVarID)
@@ -394,6 +400,7 @@ subroutine writeScalar(ncid, outputTimestep, outputTimestepUpdate, nSteps, minGR
if(.not.outputStructure(1)%finalizeStats(1)%gru(iGRU)%hru(1)%tim(iStep)%dat(iFreq)) cycle
stepCounter = stepCounter + 1
realVec(gruCounter, stepCounter) = stat%gru(iGRU)%hru(1)%var(map(iVar))%tim(iStep)%dat(iFreq)
+ outputTimeStepUpdate(iFreq) = stepCounter
end do ! iStep
end do ! iGRU
@@ -401,7 +408,9 @@ subroutine writeScalar(ncid, outputTimestep, outputTimestepUpdate, nSteps, minGR
if (outputTimeStepUpdate(iFreq) /= stepCounter ) then
print*, "ERROR Missmatch in Steps - stat doubleVec"
print*, " outputTimeStepUpdate(iFreq) = ", outputTimeStepUpdate(iFreq)
+ print*, " outputTimeStepUpdate", outputTimeStepUpdate
print*, " stepCounter = ", stepCounter
+ print*, " iFreq = ", iFreq
return
endif
class default; err=20; message=trim(message)//'stats must be scalarv and of type gru_hru_doubleVec'; return
@@ -530,7 +539,9 @@ end subroutine
! **************************************************************************************
! public subroutine writeBasin: write basin-average variables
! **************************************************************************************
-subroutine writeBasin(ncid,iGRU,outputTimestep,iStep,meta,stat,dat,map,err,message)
+subroutine writeBasin(ncid,outputTimestep,outputTimestepUpdate,nSteps,&
+ minGRU, maxGRU, numGRU, &
+ meta,stat,dat,map,err,message)
USE data_types,only:var_info ! metadata type
USE var_lookup,only:maxVarStat ! index into stats structure
USE var_lookup,only:iLookVarType ! index into type structure
@@ -541,12 +552,15 @@ subroutine writeBasin(ncid,iGRU,outputTimestep,iStep,meta,stat,dat,map,err,messa
! declare dummy variables
type(var_i) ,intent(in) :: ncid ! file ids
- integer(i4b) ,intent(in) :: iGRU ! GRU index
integer(i4b) ,intent(inout) :: outputTimestep(:) ! output time step
- integer(i4b) ,intent(in) :: iStep ! number of steps in forcing file
+ integer(i4b) ,intent(inout) :: outputTimestepUpdate(:) ! number of HRUs in the run domain
+ integer(i4b) ,intent(in) :: nSteps ! number of timeSteps
+ integer(i4b) ,intent(in) :: minGRU ! minGRU index to write
+ integer(i4b) ,intent(in) :: maxGRU ! maxGRU index to write - probably not needed
+ integer(i4b) ,intent(in) :: numGRU ! number of GRUs to write
type(var_info),intent(in) :: meta(:) ! meta data
- type(time_dlength),intent(in) :: stat(:) ! stats data
- type(time_dlength),intent(in) :: dat(:) ! timestep data
+ class(*) ,intent(in) :: stat ! stats data
+ class(*) ,intent(in) :: dat ! timestep data
integer(i4b) ,intent(in) :: map(:) ! map into stats child struct
integer(i4b) ,intent(out) :: err ! error code
character(*) ,intent(out) :: message ! error message
@@ -564,7 +578,7 @@ subroutine writeBasin(ncid,iGRU,outputTimestep,iStep,meta,stat,dat,map,err,messa
if(.not.outFreq(iFreq)) cycle
! check that we have finalized statistics for a given frequency
- if(.not.outputStructure(1)%finalizeStats(1)%gru(1)%hru(1)%tim(iStep)%dat(iFreq)) cycle
+ ! if(.not.outputStructure(1)%finalizeStats(1)%gru(1)%hru(1)%tim(iStep)%dat(iFreq)) cycle
! loop through model variables
do iVar = 1,size(meta)
@@ -579,11 +593,14 @@ subroutine writeBasin(ncid,iGRU,outputTimestep,iStep,meta,stat,dat,map,err,messa
select case (meta(iVar)%varType)
case (iLookVarType%scalarv)
- err = nf90_put_var(ncid%var(iFreq),meta(iVar)%ncVarID(iFreq),(/stat(map(iVar))%tim(iStep)%dat(iFreq)/),start=(/iGRU,outputTimestep(iFreq)/),count=(/1,1/))
+ call writeScalar(ncid, outputTimeStep, outputTimeStepUpdate, nSteps, &
+ minGRU, maxGRU, numGRU, iFreq, iVar, meta, stat, map, &
+ err, message)
+ ! err = nf90_put_var(ncid%var(iFreq),meta(iVar)%ncVarID(iFreq),(/stat(map(iVar))%tim(iStep)%dat(iFreq)/),start=(/iGRU,outputTimestep(iFreq)/),count=(/1,1/))
case (iLookVarType%routing)
if (iFreq==1 .and. outputTimestep(iFreq)==1) then
- err = nf90_put_var(ncid%var(iFreq),meta(iVar)%ncVarID(iFreq),(/dat(iVar)%tim(iStep)%dat/),start=(/1/),count=(/1000/))
+ ! err = nf90_put_var(ncid%var(iFreq),meta(iVar)%ncVarID(iFreq),(/dat(iVar)%tim(iStep)%dat/),start=(/1/),count=(/1000/))
end if
case default
err=40; message=trim(message)//"unknownVariableType[name='"//trim(meta(iVar)%varName)//"';type='"//trim(get_varTypeName(meta(iVar)%varType))// "']"; return
@@ -593,7 +610,7 @@ subroutine writeBasin(ncid,iGRU,outputTimestep,iStep,meta,stat,dat,map,err,messa
if (err.ne.0) message=trim(message)//trim(meta(iVar)%varName)//'_'//trim(get_statName(iStat))
call netcdf_err(err,message); if (err/=0) return
end do ! iVar
- outputTimeStep(iFreq) = outputTimeStep(iFreq) + 1
+ ! outputTimeStep(iFreq) = outputTimeStep(iFreq) + 1
end do ! iFreq
end subroutine writeBasin
@@ -602,48 +619,48 @@ end subroutine writeBasin
! public subroutine writeTime: write current time to all files
! **************************************************************************************
subroutine writeTime(ncid,outputTimestep,iStep,meta,dat,err,message)
-USE data_types,only:var_info ! metadata type
-USE var_lookup,only:iLookStat ! index into stat structure
-implicit none
+ USE data_types,only:var_info ! metadata type
+ USE var_lookup,only:iLookStat ! index into stat structure
+ implicit none
-! declare dummy variables
-type(var_i) ,intent(in) :: ncid ! file ids
-integer(i4b) ,intent(inout) :: outputTimestep(:) ! output time step
-integer(i4b) ,intent(in) :: iStep
-type(var_info),intent(in) :: meta(:) ! meta data
-type(time_i) ,intent(in) :: dat(:) ! timestep data
-integer(i4b) ,intent(out) :: err ! error code
-character(*) ,intent(out) :: message ! error message
-! local variables
-integer(i4b) :: iVar ! variable index
-integer(i4b) :: iFreq ! frequency index
-integer(i4b) :: ncVarID ! used only for time
-! initialize error control
-err=0;message="f-writeTime/"
-! loop through output frequencies
-do iFreq=1,maxvarFreq
-
- ! check that we have finalized statistics for a given frequency
- if(.not.outputStructure(1)%finalizeStats(1)%gru(1)%hru(1)%tim(iStep)%dat(iFreq)) cycle
-
- ! loop through model variables
- do iVar = 1,size(meta)
+ ! declare dummy variables
+ type(var_i) ,intent(in) :: ncid ! file ids
+ integer(i4b) ,intent(inout) :: outputTimestep(:) ! output time step
+ integer(i4b) ,intent(in) :: iStep
+ type(var_info),intent(in) :: meta(:) ! meta data
+ type(time_i) ,intent(in) :: dat(:) ! timestep data
+ integer(i4b) ,intent(out) :: err ! error code
+ character(*) ,intent(out) :: message ! error message
+ ! local variables
+ integer(i4b) :: iVar ! variable index
+ integer(i4b) :: iFreq ! frequency index
+ integer(i4b) :: ncVarID ! used only for time
+ ! initialize error control
+ err=0;message="f-writeTime/"
+ ! loop through output frequencies
+ do iFreq=1,maxvarFreq
- ! check instantaneous
- if (meta(iVar)%statIndex(iFreq)/=iLookStat%inst) cycle
- print*, "Time Data", dat(iVar)%tim(iStep)
- ! get variable id in file
- err = nf90_inq_varid(ncid%var(iFreq),trim(meta(iVar)%varName),ncVarID)
- if (err/=0) message=trim(message)//trim(meta(iVar)%varName); call netcdf_err(err,message)
- if (err/=0) then; err=20; return; end if
-
- ! add to file
- err = nf90_put_var(ncid%var(iFreq),ncVarID,(/dat(iVar)%tim(iStep)/),start=(/outputTimestep(iFreq)/),count=(/1/))
- if (err/=0) message=trim(message)//trim(meta(iVar)%varName);call netcdf_err(err,message)
- if (err/=0) then; err=20; return; end if
-
- end do ! iVar
-end do ! iFreq
+ ! check that we have finalized statistics for a given frequency
+ if(.not.outputStructure(1)%finalizeStats(1)%gru(1)%hru(1)%tim(iStep)%dat(iFreq)) cycle
+
+ ! loop through model variables
+ do iVar = 1,size(meta)
+
+ ! check instantaneous
+ if (meta(iVar)%statIndex(iFreq)/=iLookStat%inst) cycle
+ print*, "Time Data", dat(iVar)%tim(iStep)
+ ! get variable id in file
+ err = nf90_inq_varid(ncid%var(iFreq),trim(meta(iVar)%varName),ncVarID)
+ if (err/=0) message=trim(message)//trim(meta(iVar)%varName); call netcdf_err(err,message)
+ if (err/=0) then; err=20; return; end if
+
+ ! add to file
+ err = nf90_put_var(ncid%var(iFreq),ncVarID,(/dat(iVar)%tim(iStep)/),start=(/outputTimestep(iFreq)/),count=(/1/))
+ if (err/=0) message=trim(message)//trim(meta(iVar)%varName);call netcdf_err(err,message)
+ if (err/=0) then; err=20; return; end if
+
+ end do ! iVar
+ end do ! iFreq
end subroutine writeTime
diff --git a/build/source/actors/file_access_actor/fortran_code/write_to_netcdf.f90 b/build/source/actors/file_access_actor/fortran_code/write_to_netcdf.f90
index 7ab98ae61c9d4fbef195ee49e7e83bf43d81713d..490d7120c859d43fc1667075b997c6a23fba2a59 100644
--- a/build/source/actors/file_access_actor/fortran_code/write_to_netcdf.f90
+++ b/build/source/actors/file_access_actor/fortran_code/write_to_netcdf.f90
@@ -3,47 +3,15 @@ USE, intrinsic :: iso_c_binding
USE nrtype
USE data_types
+!TODO: This module is only used for writeParamToNetCDF the others are not.
+
+
implicit none
public::writeParamToNetCDF
public::writeDataToNetCDF
public::writeBasinToNetCDF
public::writeTimeToNetCDF
-! type var_dlength_ptr
-! type(var_dlength), pointer
-! type(var_dlength) forc_stat_all_grus
-! type(var_dlength) prog_stat_all_grus
-! type(var_dlength) diag_stat_all_grus
-! type(var_dlength) flux_stat_all_grus
-! type(var_dlength) indx_stat_all_grus
-! type(var_dlength) bvar_stat_all_grus
-
-! type(var_i) time_struct
-! type(var_d) forc_struct
-! type(var_d) attr_struct
-! type(var_i) type_struct
-! type(var_i8) id_struct
-
-! type(var_ilength) indx_struct
-! type(var_dlength) mpar_struct
-! type(var_dlength) prog_struct
-! type(var_dlength) diag_struct
-! type(var_dlength) flux_struct
-
-! type(var_d) bpar_struct
-! type(var_dlength) bvar_struct
-
-! type(var_d) dpar_struct
-! type(flagVec) finalize_stats
-! type(var_i) output_timesteps_all_grus
-
-
-
-! type(flagVec), pointer, dimension(:,:), allocatable, public :: finalize_stats_all_grus
-! type(var_i), pointer, dimension(:,:), allocatable, public :: output_timesteps_all_grus
-! type(var_dlength), pointer, dimension(:,:), allocatable, public :: bvar_stats_all_grus
-! type(var_dlength), pointer, dimension(:,:), allocatable, public :: bvar_struct_all_grus
-! type(var_i), pointer, dimension(:,:), allocatable, public :: time_struct_all_grus
contains
diff --git a/build/source/actors/hru_actor/fortran_code/hru_writeOutput.f90 b/build/source/actors/hru_actor/fortran_code/hru_writeOutput.f90
index b6a82d66ddb6fb9e930cc4500222364c1e43a964..2485e6a09ff7127acfab13a543b73f5f390319b2 100644
--- a/build/source/actors/hru_actor/fortran_code/hru_writeOutput.f90
+++ b/build/source/actors/hru_actor/fortran_code/hru_writeOutput.f90
@@ -48,6 +48,7 @@ USE var_lookup,only:iLookDIAG ! named variables for local column
USE var_lookup,only:iLookPROG ! named variables for local column model prognostic variables
USE var_lookup,only:iLookINDEX ! named variables for local column index variables
USE var_lookup,only:iLookFreq ! named variables for the frequency structure
+USE var_lookup,only:iLookBVAR ! named variables for basin parameters
USE get_ixname_module,only:get_freqName ! get name of frequency from frequency index
@@ -265,6 +266,12 @@ subroutine writeHRUToOutputStructure(&
! If we do not do this looping we segfault - I am not sure why
outputStructure(1)%finalizeStats(1)%gru(indxGRU)%hru(indxHRU)%tim(outputStep)%dat(:) = finalizeStats%dat(:)
+ print*, ""
+ print*, "indxGRU" , indxGRU
+ print*, "averageRoutedRunoff", bvarStruct%var(iLookBVAR%averageRoutedRunoff)%dat(1)
+ print*, "outputStep", outputStep
+ print*, ""
+
! ****************************************************************************
! *** calculate output statistics
! ****************************************************************************
diff --git a/build/source/actors/hru_actor/fortran_code/outputStrucWrite.f90 b/build/source/actors/hru_actor/fortran_code/outputStrucWrite.f90
index 3b4501e0bfbade74cac318d63a83e552eec08fa8..21707dc5db0dbfba4082ab435d3b3e147f84164d 100755
--- a/build/source/actors/hru_actor/fortran_code/outputStrucWrite.f90
+++ b/build/source/actors/hru_actor/fortran_code/outputStrucWrite.f90
@@ -77,10 +77,10 @@ public::writeRestart
integer(i4b),parameter :: maxSpectral=2 ! maximum number of spectral bands
contains
- ! **********************************************************************************************************
- ! public subroutine writeParm: write model parameters
- ! **********************************************************************************************************
- subroutine writeParm(indxGRU,indxHRU,ispatial,struct,meta,structName,err,message)
+! **********************************************************************************************************
+! public subroutine writeParm: write model parameters
+! **********************************************************************************************************
+subroutine writeParm(indxGRU,indxHRU,ispatial,struct,meta,structName,err,message)
! USE globalData,only:ncid ! netcdf file ids
USE data_types,only:var_info ! metadata info
USE var_lookup,only:iLookStat ! index in statistics vector
@@ -363,10 +363,12 @@ subroutine writeBasin(indxGRU,indxHRU,iStep,finalizeStats,&
case (iLookVarType%scalarv)
outputStructure(1)%bvarStat(1)%gru(indxGRU)%hru(indxHRU)%var(map(iVar))%tim(iStep)%dat(iFreq) = stat(map(iVar))%dat(iFreq)
-
+ print*, "iFreq" , iFreq
+ print*, "outputStructure(1)%bvarStat(1)%gru(indxGRU)%hru(indxHRU)%var(iVar)%tim(iStep)%dat(iFreq)", outputStructure(1)%bvarStat(1)%gru(indxGRU)%hru(indxHRU)%var(map(iVar))%tim(iStep)%dat(iFreq)
case (iLookVarType%routing)
if (iFreq==1 .and. outputTimestep(iFreq)==1) then
outputStructure(1)%bvarStruct(1)%gru(indxGRU)%hru(indxHRU)%var(iVar)%tim(iStep)%dat(iFreq) = dat(iVar)%dat(iFreq)
+ print*, "outputStructure(1)%bvarStruct(1)%gru(indxGRU)%hru(indxHRU)%var(iVar)%tim(iStep)%dat(iFreq)", outputStructure(1)%bvarStruct(1)%gru(indxGRU)%hru(indxHRU)%var(iVar)%tim(iStep)%dat(iFreq)
end if
case default
diff --git a/utils/netcdf/OutputVerification/checkOutput.py b/utils/netcdf/OutputVerification/checkOutput.py
index 5079637703395fc899b0f3a15da75303a1222797..5a85051d278baf2edaf4262e7906be96bf47b91d 100644
--- a/utils/netcdf/OutputVerification/checkOutput.py
+++ b/utils/netcdf/OutputVerification/checkOutput.py
@@ -80,15 +80,15 @@ def get_output_vars(model_output_file):
-num_hru = 10
+num_hru = 2
print("Checking output for", num_hru, "HRUs")
# dataset_1 = "/scratch/kck540/Summa_Sundials/non-actors/SummaOriginal_G000001-000010_timestep.nc"
# dataset_2 = "/scratch/kck540/Summa_Sundials/actors/SummaActorsGRU1-10_timestep.nc"
-dataset_1 = "/scratch/kck540/Summa_Sundials/non-actors/SummaOriginal-BE_G000001-000010_timestep.nc"
-dataset_2 = "/scratch/kck540/Summa_Sundials/actors/SummaActors-BEGRU1-10_timestep.nc"
+dataset_1 = "/scratch/kck540/Summa_Sundials/non-actors/SummaOriginal-BE_G000001-000002_timestep.nc"
+dataset_2 = "/scratch/kck540/Summa_Sundials/actors/SummaActors-BEGRU1-2_timestep.nc"
-model_output_file = "/gladwell/kck540/Sundials_Settings/outputControl.txt"
+model_output_file = "/gladwell/kck540/Summa_Distributed_Settings/Summa_Settings/outputControl.txt"
output_vars = get_output_vars(model_output_file)
verify_data(dataset_1, dataset_2, num_hru, output_vars)