From 3642f7b9285400fc23c03fa8bc01673e4222b0a5 Mon Sep 17 00:00:00 2001
From: Kyle <kyle.c.klenk@gmail.com>
Date: Mon, 3 Oct 2022 20:11:24 +0000
Subject: [PATCH] added indexing changes Ashley made from Summa-Sundials

---
 build/source/engine/ssdNrgFlux.f90 | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/build/source/engine/ssdNrgFlux.f90 b/build/source/engine/ssdNrgFlux.f90
index 04985bd..5b4ae15 100644
--- a/build/source/engine/ssdNrgFlux.f90
+++ b/build/source/engine/ssdNrgFlux.f90
@@ -358,9 +358,13 @@ subroutine ssdNrgFlux(&
         ! start with the un-perturbed case
         vectorVolFracLiqTrial(1:2) = mLayerVolFracLiqTrial(mLayer_ind)
         ! need to protect against negative indexes
-        if ( mLayer_ind(1) .ge. nSnow .and. mLayer_ind(2) .ge. nSnow)then
-          if (iLayer==nSnow ) mLayer_ind(1) = nsnow+1
-          vectorMatricHeadTrial(1:2) = mLayerMatricHeadTrial(mLayer_ind-nSnow)
+        if ( mLayer_ind(1) > nSnow .and. mLayer_ind(2) > nSnow)then
+         vectorMatricHeadTrial(1:2) = mLayerMatricHeadTrial(mLayer_ind-nSnow)
+        else if (mLayer_ind(2) > nSnow)then !mLayer_ind(1) == nSnow
+         vectorMatricHeadTrial(1) = realMissing
+         vectorMatricHeadTrial(2) = mLayerMatricHeadTrial(mLayer_ind(2)-nSnow)
+        else !snow layer
+         vectorMatricHeadTrial(1:2) = realMissing
         end if
         vectorTempTrial(1:2) = mLayerTempTrial(mLayer_ind)
         vectorVolFracIceTrial(1:2) = mLayerVolFracIceTrial(mLayer_ind)
-- 
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