Commit 69b69989 authored by Lingling Jin (lij313)'s avatar Lingling Jin (lij313)
Browse files

added Shell examples

parent 01086a34
>441E-590 Nov_16c-2001/Nov16c/441E-590.SEQ trimmed
CTCCACGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCA
CGAGGCGTCGACGTTCTACGACACGTCGTGCCCCAGGGCTCTGGCCACCATCAAGAGCGG
CGTGGCGGCAGCCGTGAGCAGCGATCCCCGCATGGGCGCCTCCCTGCTCAGGCTGCACTT
CCACGACTGCTTTGTCCAAGGCTGTGACGCGTCTGTTCTTCTGTCCGGCATGGAACAAAA
CGCGGGTCCGAACGTGGGGTCGCTGAGGGGCTTCGGCGTCATCGACAACATCAAGACCCA
GCTGGAGAGTATATGCAAGCAGACCGTCTCCTGCGCCGACATCCTCACCGTCGCCGCCCG
CGACTCCGTTGTCGCCCTTGGAGGGCCATCGTGGACTGTCCCGCTGGGGAGACGGGACTC
CACCACCGCAAGTGCCTCGCTGGCGAACAGTGACCTCCCTGGCCCGAGCTCTAGCCGGTC
ACAGCTCGAGGCCGCGTTCCTCAAGAAGAACCTTAACACGGTCGACATGGTCGCGCTCTC
AGGCGCGCACCACATCGGGAAGNCCAGTGCTCCAACTTTCGGACTCGGATCTACGGGGGT
GACAACAACATCAAACACTGGCTTCCGACGTCTCTCAAGGNCAAACTGCCCCCCAGTCCC
GGGGGGCAAACAACCAAACCTTGGNCGNAACCNTGGGAACACNNANCGAACGCCCCCAAA
NGGCGTTTTCNGAACAAAACGGCCCTTNACTTNCAACCCAAAACCCTTCCCTTGGTCAAC
AAAAAAAAAANGGGGGNTTCCCCTTGGGNAACTTCGNGGAAANCCAAANGGNGGGGTTTC
TTTTAAAAACAAAC
>441E-620 Nov_16c-2001/Nov16c/441E-620.SEQ
CGCGGTGGTGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGG
AGCAATCCTTACGGTGAAAGAACACACTGAGCCTACGTACGTAGCTAGATAGATTTGTGA
GCCATGGCTTCCAGCTCTGGCTGTAGGGCCTGGCATTGCTTGCTTGCCCTCTTCCTCCTC
TCCTCTTCCGCGTATGGTCAGCTGTCGCCGTCGTTCTACGCCAAGAGCTGCCCGACGCTG
CAGCTCATCGTGCGGGCCACCATGATCAAGGCGCTCCTCGCCGAGCGCCGAATGGGCGCC
TCCCTCCTCAGGCTCCACTTCCACGACTGCTTTGTCCAAGGCTGTGACGGGTCCATTCTC
TTGGATGACGTGGGTAGCTTCGTTGGCGAGAAGACGGCCTTTCCGAACGTGGATTCGGTG
CGGGGCTACGAGGTGATCGACGAGATCAAGAAGAACGTGGAGCTGCTCTGCCCTGGCATC
GTCTCCTGCGCCGACATCGCCGCCCTCGCAGCACGGGACGGCAACTTTCCTGCTAGGCGG
GGCCCAGCTGGTCGGTGCCGCTCGGCCGCCGGGACTCAAACGACGGCCAGCTTGACTGAG
GCGAACAGCGACCTCCCGGCGCCAAGCTTAAAGCCTGGGCCCTACTCATCAAAGCGTTCG
ACAAGAACCAGCCTGAGCCCGCAGGACCTCACTGCGCCTGTCCGGNGCGCAAAACCATCG
GCTTNTTCCCAATGNCCTCAACTTCCGCGACACATCTAACAACGGCACCCAACAATCGAC
CCGGGCGNTTCNCCANCCNTGCGCAAAGCGCAACCTGGCCCCGGCCCAGG
>441E-1189 wei8feb28/441E1189.SEQ trimmed
ACTCACGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCA
CGAGGCACTCCACCAGTAAAGAAGTGCAGGCAACTAGCTAGCTAACCATGGCCGCCTCTG
CCTCTTGCATTTCACTGGTGGTGCTCGTGGCTCTGGCCACGGTGGCGTCGGCGCAGCTGT
CGCCGACGTTCTACGACACGTCGTGCCCCAGGGCCCTGGCCACCATCAAGAGCGGCGTCA
TGGCCGCCGTGAGCAGCGACCCTCGGATGGGCGCGTCGCTGCTCCGGCTGCACTTCCACG
ACTGCTTCGTCCAAGGCTGTGACGCGTCTGTTCTGCTGTCTGGCATGGAACAAAACGCTC
TCCCGAACAACGGGTCACTGCGGGGCTTCGGCGTCATCGACAGCATCAAGACACAGATCG
AGGCCATCTGCGCCCAGACCGTCTCCTGCGCCGACATCCTCACCGTCGCTGCCCGTGACT
CCGTCGTCGCCCTCGGAGGGCCATCATGGACAGTCCCTCTGGGAAGAAGGGATTCCATAG
ATGCAAACGAGGCGGCGGCAAACANCGACCTCCCANGCCCTACGTCTANCCGTTCAGATC
TTGANCTGGCATTCAGCAACAAGGGCCTCCTTACGGNCGACATGGTGGNCCTCTCCGGCG
GCGCANACCATCNGNCAAGGCGCANTGNCGGGNANCTTNAAAGGACAAGGATCTTACAAA
TGGAGACCCAANATTCGACCNACNAACCTTCNGCCCAANTTCTTNTTCCGGGGCCAAAAT
TGGCCCCCCGG
>441E-1197 wei8feb28/441E1197.SEQ trimmed
CTCACTCGGAGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCAC
GAGGCACCACTCCACCAGTAAAGAAGTGCAGGCAACTAGCTAGCTAACCATGGCCGCCTC
TGCCTCTTGCATTTCACTGGTGGTGCTCGTGGCTCTGGCCACGGTGGCGTCGGCGCAGCT
GTCGCCGACGTTCTACGACACGTCGTGCCCCAGGGCCCTGGCCACCATCAAGAGCGGCGT
CATGGCCGCCGTGAGCAGCGACCCTCGGATGGGCGCGTCGCTGCTCCGGCTGCACTTCCA
CGACTGCTTCGTCCAAGGCTGTGACGCGTCTGTTCTGCTGTCTGGCATGGAACAAAACGC
TCTCCCGAACAACGGGTCACTGCGGGGCTTCGGCGTCATCGACAGCATCAAGACACAGAT
CGAGGCCATCTGCGCCCAGACCGTCTCCTGCGCCGACATCCTCACCGTCGCTGCCCGTGA
CTCCGTCGTCGCCCTCGGAGGGCCATCATGGACAGTCCCTCTGGGAAGAAGGGATTCCAT
ANATGNAAACGAGGNGGTGGCAAACAGCGACTCCCAGCCCTACGTCTAGCCGTTCAGATC
TTGAG
>441E-1210 wei8feb28/441E1210.SEQ trimmed
AAACTGGACTCATCCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAA
TTCGGCACGAGGAACAAGTGCAGGTAGCACGCATAGCTCTGGTCTTGTAGCTAGGTAGCT
AACCATGGCCATGGGTTCTGCCTCTCGCATTTCTCTGGTGGTGCTCGTGGCTCTGGCCAC
GGCGGCGTCCGGGCAGCTGTCGTCGACGTTCTACGACACGTCGTGCCCCAGGGCTCTGGC
CACCATCAAGAGCGGCGTGGCGGCAGCCGTGAGCAGCGATCCCCGCATGGGCGCCTCCCT
GCTCAGGCTGCACTTCCACGACTGCTTTGTCCAAGGCTGTGACGCGTCTGTTCTTCTGTC
CGGCATGGAACAAAACGCGGGTCCGAACGTGGGGTCGCTGAGGGGCTTCGGCGTCATCGA
CAACATCAAGACCAGCTGGAGAGTATATGCAAGCAGACCGTCTCCTGCGCCGACATCCTC
ACCGTCGCCGCCCGCGANTCCGTTGTCGCCCTTGGAGGGCCATCGTGGACTGTCCCGCTG
GGGAGACGGGACTCCACCACCGCAAGTGCCTCGCTGGCGAACAGTGACCTCCCTGGNCCG
AGCTCTANNCGGTCACAGCTCNAGGCCGCGTTCCTCAAGAAGAACCTTAACACGGTCGAA
ATGGTCGCGCTCTCANGGGCGCACACCCATCGGGAAAGGCCCANTGCTCCCAACTTTTCG
GACTCGGAATCTACCGGNGGTGACNACCAAACATNNAACAACTGGCCTTTCCNGAACGTC
TCTCAAAGGGCCAACTNGNCCCCCANTCCCGGGGGGGAAAAAACCCAAANCCTGGGNGGA
AANCTTGGGAAAACNAAANAACNCCCCCAAACGNCNGTTTCGAAAAAACGCCCTAAA
>441E-2117 Dec22/Dec22/441E2117.SEQ trimmed
TTCCAAAGCAAAGCTGNCTCTCACCGCGGTGTCGGCCGCTCTAGAACTAGTGGATCCCCC
GGGCTGCAGGAATTCGGCACGAGGCCTGGCCCGAGCTCTAGCCGGTCACAGCTCGAGGCC
GCGTTCCTCAAGAAGAACCTTAACACGGTCGACATGGTCGCGCTCTCAGGCGCGCACACC
ATCGGGAAGGCCCAGTGCTCCAACTTTCGGACTCGGATCTACGGCGGTGACACCAACATC
AACACTGCCTTCGCGACGTCTCTCAAGGCCAACTGCCCCCAGTCCGGCGGCAACACCAAC
CTGGCGAACCTGGACACGACGACGCCCAACGCGTTCGACAACGCCTACTACACCAACCTC
CTGTCACAGAAAGGGCTCCTGCACTCGGACCAGGTGCTCTTCAACAACGACACCACCGAC
AACACCGTCCGCAACTTTGCGTCCAACGCGGCGGCCTTCAGCAGCGCCTTCACGACGGCC
ATGATCAAGATGGGAAACATCGCGCCGCTCACCGGGACGCAGGGCCAGATCAGGCTCAGC
TGCTCCAAGGTGAACTCGTGGATGGACGTATGCGTCGGCAGCACGACACGTGAATGAATA
AGGCCCCCCAAAACANTGGCCAATACCACTTATCATACCAGCACTTGAATTGTGTATTTT
CAAAGCATGTGCNGCAGCACATCATGCATGCNTCAACGTATGTNAACGANGGGTTGAATC
CTCAAATTCTCATGCNAAAAGGCAAGGGAGGAATTTACTATNAATCCTACCCTTACACGG
GAATGGAAAGATGTAAACNCCTNTTTGTGGAAAATTTGGGCGNTGGAAATGGCNCCNNGC
TCCCATTTATTTGGTAAAAAAAAAAAAAAAAAAAAACT
>441E-2135 Dec22/Dec22/441E2135.SEQ trimmed
AAAACTGGATCTCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAG
GGAATTCGGCACGAGGGCTCACTGTGCCGGGCTTGCGAGGGTGAGCGATACCAGCTAGCC
ACAGCGCACGCACGACGGCCATGGCGAGCAGCGGCGGGCTGGCCGGTCTGGCGGTGCTGC
TCACCGCCGTGCTGTGCCTGCAGCTGCCGGTCCACAGCCGCGCGCAGCTGCGCGTGGGGT
TCTACAACACCACCTGCCCCAACGCCGAGGCCATCGTCCGGCAGGCCGTCACGGCCGCCT
TCGCCACCAACCCCGGCGTCGCCGCCGGCCTCATCCGCCTCCACTTCCACGACTGCTTCG
TCGAGGGCTGTGATTCATCGGTGCTCCTGTCCGTCAACCCCGGCGGAGGCACGACGGAGC
GCGAGGCAGCGCCGAACAACCCGAGCCTGCGCGGCTTCGCGGTCGTGGACGCCGCCAGGG
CGGCATTGGAGCAGAGCTGCCCGCGCACGGTGTCATGCGCCGACATCCTGGCCTTCGCCG
CCCGGGACAGCGTGAACATCACCGGCAGCAACGCCTTCTACCAGGTCCCTTCCGGCCGCC
GCGACGGGAACTCTCGACCGACACCGGCGCGTTCACCCTCCCGGGGCCGAACCTGACGGC
GGACGGCCTCNTCAGGGGGTTCCGGACGGAACCTGACCGCCGAAGGNNATGGTGGTCTGT
CGGGCTCCCAACAATGGGGGGCTCCCACTGCAACTNCTTTATTCGTCCGGAAACCGGGAA
CC
>441E-2315 wei7feb26/441E2315.SEQ trimmed
TGGTGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGGAGA
AGNTTATATCTCATTATTATGTATACAACTATAAGTAGGATNGATAGNAATTCTCCATGC
CTTTGCATGAGAAAGNGGGAATTCGATTGCNACATAATATGNGGATGCATGCATGATTTG
CTGCTGCTCGCACATAAACTACACATTTCAAGTGCTGGTATTNATATTGGCCACTGGNTC
TGTGNCCTTATTCCTTCNTCAGGTGTCGCGNNTGCGAGCGAAGNCGANNAACANANTCGC
CTCNTNNCGATCANACNCGAANTACCNNCCCTGNACANACACTNACCCNTGNATNCNANC
CTGCNCCTCTNCCGNCTCTGNNCNACANNCATNTGACCCNCANTACTNATNCCNNCANCA
NTANACCCNTNCTCCCCCACNCCTCCCNNCNNCANNACACCCANACCNCTCNNANCNACC
ATCATCCTCCCCACATAACACCNNTNANCCNCCNNCCTNCCCNTCATNCNCCNNATACNC
TCCNTCACANCTATATATNCCCNCTACTACTNTANNCCCCATCCNNTNNCGNNCCTNANN
ANNCTACCCATCNCTCTCCNTCTCCCTNNTCTCTNCCTCTCCTCTCNTCNACTNTTCATC
TNCCCACACCNCTNTCCATCCNTCTNTCCCTCACCTCACTNTACATCACNCNACGCGACG
TNNTACATCACCANTCTCTCTATCCATCATNCNCTCCTNCTNTANNACACANCCTNGCTA
TACANCTNNCCTNTTCTNCCCACCTATATAACTTANATCNTACTTNTATNACTANCCTCA
NTTNNTTCCTATCCTACTATCNNTNTCCTNTCATCTCCACCTNGNNCTACNCTNCTATNN
CTNAACNCTACCAANNCCCTACCTNCNTCCTACTCCCNNCTCCACCCTCTCACACNACNT
CTCNCTCTTCTCCTNCCCACTCTCTAATCNCACCTCCATCCNACTTATTNCCCATCTANC
CANCATNANANCCATNCCTCNCCANNTCCCTCATANCCCTNCNACNACNANAAACCACTC
NCCNCATCACANCCANAGCTNCNCCNCNCACCNCATACACACCAGTCCCATCT
>441E-2320 wei7feb26/441E2320.SEQ trimmed
CACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACG
AGGGCGCGTCGCTGCTCCGGCTGCACTTCCACGACTGCTTCGTCCAAGGCTGTGACGCGT
CTGTTCTGCTGTCTGGCATGGAACAAAACGCTCTCCCGAACAACGGGTCACTGCGGGGCT
TCGGCGTCATCGACAGCATCAAGACACAGATCGAGGCCATCTGCGCCCAGACCGTCTCCT
GCGCCGACATCCTCACCGTCGCTGCCCGTGACTCCGTCGTCGCCCTCGGAGGGCCATCAT
GGACAGTCCCTCTGGGAAGAAGGGATTCCATAGATGCAAACGAGGCGGCGGCAAACAGCG
ACCTCCCAGGCCCTACGTCTAGCCGTTCAGATCTTGAGCTGGCATTCAGCAACAAGGGCC
TCCTTACGGTCGACATGGTGGCCCTCTCCGGCGCGNACACCATCGGCCAGGCGCAGTGCG
GGACCTTCAAGGACAGGATCTACAATGAGACCAACATCGACACGACCTTCGCCACATCTC
TCCGGGCCAACTGCCCCCGGTCCGGCGGCGACGGCAGCCTGGCGAACTGGACACGACGAC
GGCCAACACCTTCGACAACGCCTACTACACCAACCTCATGTCACAGAAGGGGGCTCCTGC
ACTCGGACCAGGTGCTGNTCCACAACGACACCACCGACAACACGGTCCGGAACTTTGNCG
TCCAACCCCGGCGCATTCNACAANCGCCTTTTCACGAACGGCCCAT
>441E-2504 08jan02wei5/441E2504.SEQ trimmed
GAGTTCCACGCGGNGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCG
GCACGAGGTCCACCAGTAAAGAAGTGCAGGCAACTAGCTAGCTAACCATGGCCGCCTCTG
CCTCTTGCATTTCACTGGTGGTGCTCGTGGCTCTGGCCACGGTGGCGTCGGCGCAGCTGT
CGCCGACGTTCTACGACACGTCGTGCCCCAGGGCCCTGGCCACCATCAAGAGCGGCGTCA
TGGCCGCCGNGAGCAGCGACCCTCGGATGGGCGCGTCGCTGCTCCGGNTGCACTTCCACG
ACTGCTTCGTCCAAGGCTGTGANNCGTCTGTTCTGNTGTCTGGCATGGAACAAAACGCTC
TCCCGAACAACGGGTCACTGCGGGGNTTCNGCGTCCATCGACAGCATNCAANACACAGAT
CGAGGCCATCTGCGNCCAGACCGTCTCCTGCGCCGACATCCTCACCGNCNNTGCCCGNGA
CTCCGTCCNTCNTCCCTCGNAAGGATCTATACATGNACAGTCCCCTCTGGGNAAAAAACG
CANNTTTNCNCAANNATCCCAACCNATAGNCGCAAGANNANACAACNACACGACCNNCAC
CTNANNANCCCATNNNCANNCTAAGNCCGCTANACANCANNNANCTCANNCTCTNNCCAA
CTTACNTCTANNANNNATAAGCTACCCTTCATNTNTAACTNAGACACTGAACNNNNGGAG
NTAGNGACCAACNTCTCTCTCAGCACNNTACACANNNATNACTATCCANTATCGCCTCNA
TCTNCCATCNTCACCTACAATNGAAGCCNCTNAANCACNCCCTNCTTCTTAANAGNGNTA
CTCTACTGCGCTNTCTCTACNTNANNCTCACAGCNTGCACACCTNCCTTNCCCACCTCAC
TNNGAGTANAATNCNATACGTNAANNTCTNTCCTNTCTCCGCGACTCNACCAAAACANNN
CNATNCTCTTTTCTTNTACNCAGCTTATNCTCCCATCTTANCTTTNTCNACCCTCAACCT
CCCTCNATCCANACNCCAACNNAANNGGNACNCTCANCTAANACNTAAAGTCCAANAAAA
CACACATCTNNTNACNCTACCCATTCCCCCCCCCTCCCCACNCCCCCNNANTTCNCTCAC
NCNTTACACCACNCNNTTNCNCCNACTCAANTCCANCNCNTCATCCTCTATCCTANACTC
ANAAGCCTGCCACACCTTNTAACCCNTCCCTACTTTATNCACTAAACTCATNCNNCTACA
ATATGCNGNTNCACTCNCCNCCNATATACTNTACCTAAGCATTCTCCTCACACACA
>441E-877 Dec21wei3/Dec21wei3/441E877.SEQ trimmed
CTTACTCACGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCG
GCACGAGGCTCCACCAGTAAAGAAGTGCAGGCAACTAGCTAGCTAACCATGGCCGCCTCT
GCCTCTTGCATTTCACTGGTGGTGCTCGTGGCTCTGGCCACGGTGGCGTCGGCGCAGCTG
TCGCCGACGTTCTACGACACGTCGTGCCCCAGGGCCCTGGCCACCATCAAGAGCGGCGTC
ATGGCCGCCGTGAGCAGCGACCCTCGGATGGGCGCGTCGCTGCTCCGGCTGCACTTCCAC
GACTGCTTCGTCCAAGGCTGTGACGCGTCTGTTCTGCTGTCTGGCATGGAACAAAACGCT
CTCCCGAACAACGGGTCACTGCGGGGCTTCGGCGTCATCGACAGCATCAAGACACAGATC
GAGGCCATCTGCGCCCAGACCGTCTCCTGCGCCGACATCCTCACCGTCGCTGCCCGTGAC
TCCGTCGTCGCCCTCGGAGGGCCATCATGGACAGTCCCTCTGGGAAGAAGGGATTCCATA
GATGCAAACGAGGCGGCGGCAAACAGCGACCTCCCAGGCCCTACGTCTAGCCGTTCAGAT
CTTGAGCTGGCATTCAGCAACAAGGGCCTCCTTACGGTCGACATGGTGGCCTCTCCGGNG
CGCACACCATCGGNCAGGCGCAGTGCGGGACCTTCAAGGACAGGATCTACAATGAGACCA
ACATCGACACGACCTTCGCCACATCTCTTCCGGGCCAAACTGCCCCCGGTCCCGGCGGNN
GACGGNCAANCCCNGNGCGNAACCTTGGGAAACCNAANGACGGCCCCAACAACCCTTC
>441E-935 Dec22/Dec22/441E935.SEQ trimmed
CTGGATTCTCACCGCGGTGNCGNCCGCTCTANAAACTAGTGGATCCCCCGGGCTGCAGGG
AATTCGGCACGAGGCAGATAACAAGTGCAGGTAGCACGCATAGCTCTGGTCTTGTAGCTA
GGTAGCTAACCATGGCCATGGGTTCTGCCTCTCGCATTTCTCTGGTGGTGCTCGTGGCTC
TGGCCACGGCGGCGTCCGGGCAGCTGTCGTCGACGTTCTACGACACGTCGTGCCCCAGGG
CTCTGGCCACCATCAAGAGCGGCGTGGCGGCAGCCGTGAGCAGCGATCCCCGCATGGGCG
CCTCCCTGCTCANGCTGCACTTCCACGACTGCTTTGTCCAAGGCTGTGACGCGTCTGTTC
TTCTGTCCGGCATGGAACAAAACGCGGGTCCGAACGTGGGGTCGCTGAGGGGCTTCGGCG
TNATCNACAACATCAAGACCCAGCTGGAGAGTATATGCAAGCAGAACGTCTCCTGCGCCG
ACATCCTCACCGTCGCCGCCCGCGACTCCGTTGTCNCCCTTGNAGGGCCNATCGTGGACT
GTCCCGCTGNGGAAACGGGACTCCCACCACCCCAA
>441E-962 Dec22/Dec22/441E962.SEQ trimmed
ATCTCACGCGGTGGCGTCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGCAACCAGA
TAACAAGTGCAGGTAGCACGCATAGCTCTGGTCTTGTAGCTAGGTAGCTAACCATGGCCA
TGGGTTCTGCCTCTCGCATTTCTCTGGTGGTGCTCGTGGCTCTGGCCACGGCGGCGTCCG
GGCAGCTGTCGTCGACGTTCTACGACACGTCGTGCCCCAGGGCTCTGGCCACCATCAAGA
GCGGCGTGGCGGCAGCCGTGAGCAGCGATCCCCGCATGGGCGCCTCCCTGCTCAGGCTGC
ACTTCCACGACTGCTTTGTCCAAGGCTGTGACGCGTCTGTTCTTCTGTCCGGCATGGAAC
AAAACGCGGGTCCGAACGTGGGGTCGCTGAGGGGCTTCGGCGTCATCGACAACATCAAGA
CCAGCTGGAGAGTATATGCNAGCAGACCGTCTCCTGCGCCGACATCCTCACCGTCGCCGC
CCGCGACTCCCGTTGTCGCCCTTGGAGGGCCCATC
>441E-AC8 441EAMar2502/441EAC8.Seq trimmed
GGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTACCG
CCTCCTCCCCCCAAACTCCCAACTACCCGCTCTGCTCCTGAGTTCCGAGCCCGCCCGATC
TCCGCCGCAGCCATCCCGCCGACGCCGCTCCGTCAGGTCACACGGGGAACCTCGCCATGG
CCGCCGCGTCCTCCGCCACCTCCGTCCACGACTTCACCGTCAAGGATTCAAGCGGCAAGG
ACGTCGACCTCAGCGTCTACAAGGGGAAGGTTCTTCTCATTGTTAACGTCGCATCCCAGT
GTGGCTTAACCAACTCCAACTACACCGAGCTGAGCCAGCTGTACCCCAAGTACAAGGACC
AAGGCTTTGAGATCTTGGCTTTCCCATGCAATCAGTTTGGTGGGCAGGAGCCTGGCACCA
ATGATGAGATAGTTCAGTTTGCCTGCACTCGCTTCAAGGCTGAGTACCCCATTTTTGACA
AGGTTGATGTCAACGGCAACAATGTTTCTCCCCTATACAAGTTCCTGAAGTCTAGCAAAG
GTGGCCTTTTCGGCGACAGCATCAAGTGGAACTTCTCCAAGTTCTTGGTTGACAAGGAGG
GTCACGTTGTGGACCGCTATGCCCCGACCACTTCCCCCCTGAGCATTGAGAAGGATATCA
AGAACTGCTTGGGAGCTCTTANANGCGCCGCTGGCCGGACGTCTCGAGAAATTGGCACTC
TGTATTCTAGAAACAATAATAATGGTGGNGGTGAAATAAAATCTGTANCCAGCATTTCAG
AAGGCTGCATCTGCTATG
>441E-BA7 441EBMar2602/441EBMar2602/441EBA7.Seq trimmed
CGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCAGCGGAGTTAG
TATTAGAACTAACACCACCATTGCCATGCTCATGAACGATGGAAATCTTGTCCTACAAAA
TGCCTCAAACTCATCCGACATTCTATGGCAAAGTTTTGATCACCCAACAAATACTTTCCT
CCCTGATGCTAAGATCGGCCGAGACAAGATCACTGGTTTGACTCGCCGTCTTGTTTCCAG
TAAGAATTCAATTGACCCAGCTCGTGGTCGTTACTGTAACAAGTTAGTTCCTAACAGGTT
GATCCTTACGCTTTTGAACTCATCCATAGTATACTGGTCTAGTGGGGAATGGAATGGACA
GTATTTTAGCACCATTCCGGAGATGTTAAGCCACAATTTGATAGACTTCAAGTTTGTCAA
CAACACAAATGAAGAGTACTTCACATTCAGCTTACTGAACGACACGATGATCATGCATCA
TCTACTTGATGTTTCTGGTCAACTGAAGACTTTAATCTGGGATGAGGTCTCACAGGATTG
GTTAGGTTCCTACTCCAACCCCAGAGCTCAGTGTGATGTCTATGCTCTGTGTGGACCATT
CACTGTGTGCGATGACAACTCAGCTCCATATTGTAGCTGTATGAAGGGCTTCTCCATAAG
ATCCCGGAAGATTGGGAGCTAAATGATAGAANCGATGGATGTGTGAGAAAATACTCCCTT
AAANTGTGGCAGGTATAAGGAGTACCGCAGGAATGACCGAT
>441E-BF1 441EBMar2602/441EBMar2602/441EBF1.SEQ trimmed
GCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGG
CACGAGGCTCGACCTATCACAAATTCACAATTAAGTGACGTTGCATTTGAGCTAGCTAGC
CATGGCCTCTTCGTCTCTATCAGCCGTGTTGCTCTTGTGCCTGGCCGTGGCGGCGTCGGC
GCAGCTGTCGCCGACGTTCTACGACACGACGTGCCCGAACGCTCTGGCGACCATCAAGTC
CGCCGTGACGGCCGCCGTGAACAAGGAGAACCGCATGGGCGCGTCGCTGCTCCGGCTGCA
CTTCCACGATTGCTTCGTCCAAGGTTGCGACGCGTCTGTTCTGCTGTCTGGCATGGAACA
GAACGCTATCCCGAACGTGATGTCGCTGCGAGGCTTCGAAGTCATCGACAGCATCAAGGC
GCAGCTCGAGACCATGTGCAAGCAGACCGTCTCCTGCGCCGACATCCTCACCGTCGCCGC
CCGCGACTCCGTCGTCGCCTTGGGAGGGCTTCGTGGACAGTTCCTCTAGGAAGGAGGGAC
TCCACCAACGCAAACGAAGCGGCGGCGAACAACGAGCTACTCCCCCATTCTTCGACCTCG
TCAACCTCACCCAGTCCTTCGGCGACAAGGGCTTCACCGTCACCGACTGGCGCCTCTCCG
GGGCCACACCATCGGGCANGCACAGTGCCAGACTTCCGGGACAGGTCTACACGAGACCAA
CTCAATCAGNTTCCGAATCGTCAAGCAATGCCCAGCGACGGTTCG
# Revision of standard EDNAMAT which accounts for AGCTU plus "N"
# We will treat N matching with any base as having a score of 0
# i.e. neither good nor bad. Note that N-N is given a score of
# 0 and U-T is considered a mismatch.
A C G N T U
A 5 -4 -4 0 -4 -4
C -4 5 -4 0 -4 -4
G -4 -4 5 0 -4 -4
N 0 0 0 0 0 0
T -4 -4 -4 0 5 -4
U -4 -4 -4 0 -4 5
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment