diff --git a/Dockerfile b/Dockerfile index 374a6e614b01100dd43686ebc6be7e71dba35cad..f14d99286bb79cb7b4a2f05f83f9032ee3704143 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,9 +1,6 @@ # base img FROM condaforge/mambaforge:4.12.0-0 -# add yaml config to /conf -ADD conda/ /conf/ - # install basic dependencies RUN apt-get update && \ apt-get install -y curl wget && \ @@ -17,6 +14,9 @@ RUN seqdb_vers="1.0" && \ echo "export PATH=/seqdb-${seqdb_vers}/:\$PATH" >> ~/.bashrc && \ . ~/.bashrc +# add yaml config to /conf +ADD conda/ /conf/ + # create a conda env for each yaml config RUN CONDA_DIR="/opt/conda" && \ for file in $(ls /conf); do mamba env create --file /conf/$file; done